Tenacibaculum mesophilum: F9Y86_13390
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Entry
F9Y86_13390 CDS
T06242
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tmp
Tenacibaculum mesophilum
Pathway
tmp03030
DNA replication
tmp03410
Base excision repair
tmp03420
Nucleotide excision repair
tmp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tmp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F9Y86_13390 (ligA)
03410 Base excision repair
F9Y86_13390 (ligA)
03420 Nucleotide excision repair
F9Y86_13390 (ligA)
03430 Mismatch repair
F9Y86_13390 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tmp03032
]
F9Y86_13390 (ligA)
03400 DNA repair and recombination proteins [BR:
tmp03400
]
F9Y86_13390 (ligA)
Enzymes [BR:
tmp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F9Y86_13390 (ligA)
DNA replication proteins [BR:
tmp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F9Y86_13390 (ligA)
DNA repair and recombination proteins [BR:
tmp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F9Y86_13390 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F9Y86_13390 (ligA)
MMR (mismatch excision repair)
DNA ligase
F9Y86_13390 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F9Y86_13390 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
BRCT_2
Auto_anti-p27
HHH
AphA_like
5_3_exonuc
HNOB
Motif
Other DBs
NCBI-ProteinID:
QFS29342
LinkDB
All DBs
Position
2937495..2939492
Genome browser
AA seq
665 aa
AA seq
DB search
MTVQEKIQQLREELHKHNHSYYVLDAPTISDYEFDIKLKELQELEDENPEYFNPNSPTQR
VGGEVTKNFETVTHKHRMYSLDNSYSKEDLLDWEKRVQKILGTDEVEYTCELKYDGASIN
LTYENGEFVQAVTRGDGFQGDNVTTNIRTIKSIPLLPNSDFVRDFEMRGEIILPLDGFNK
MNEERIANDEEPYRNPRNTASGSLKLQDSAEVAKRPLDCLLYQLVTRERKYASHFESLEA
ARKVGFKIPDTIVLAKSIEEVLDFVNEWDVKRHTLPYETDGVVVKVNSFQQQDELGYTSK
APRWAIAYKFKAEQVSTVLNEITYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIA
KLDVRVGDTVFVEKGGEIIPKIIAVDLTKRPEDSVPTQYATHCPECNTELVRTDGDAKHY
CPNEFGCAPQITGRIKHFISRKAMDIDGLGGETVDLLRKEGLIKNYADLYDLTVEQVIPL
ERMAEKSAQNMIEGIEKSKEIPFEKVLFALGIRFVGETVAKKLAKHFKSIDNLMNADFET
LISVDEIGDRIAQSIIDFSNNLGNIDLINRLKSHGVQLEVSAESLEGQTDKLAGKVFVVS
GVFHQMSRTELKKAIEDNGGKVSSSISKKTTYIVAGDNMGPSKLTKAESLGIPIISEQDF
IDMIA
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgacagttcaggagaagatacaacaattaagagaagagttacacaaacataatcatagt
tattatgtgttggatgcaccaaccatatcagattatgagtttgatattaagttaaaagag
cttcaagagttagaagatgaaaatccagaatattttaatccaaattccccaacgcagcga
gtaggaggagaagtaactaaaaactttgaaacggttactcacaagcatagaatgtattcg
ttagacaattcgtactctaaagaagatttgttagattgggaaaaacgtgtccagaaaatt
ttaggaaccgatgaggttgaatatacctgtgaattaaaatacgatggagcttcaataaac
cttacttatgagaatggtgagtttgtacaagcagttactcgtggagatggttttcaagga
gataatgtaacaaccaatattcgtacaataaaatccattccattattgccaaatagtgat
tttgtgagagattttgaaatgcgaggagaaatcattttaccgttagacggatttaataaa
atgaatgaagaacgtattgcgaatgatgaagaaccttatagaaatccgcgtaataccgct
agtggaagcttgaagttacaagatagtgcagaagtagcaaaacgcccgttagattgtttg
ttgtatcaattagtaacgagagaacgtaaatatgcttcgcattttgaaagtttagaagcc
gccagaaaagttggatttaaaattccagacactattgttttagctaagtcgattgaagag
gtgttagattttgtaaacgagtgggatgttaaacgtcacacgttaccttatgaaacggat
ggagtagtggtaaaagtaaattcgtttcagcaacaagatgaattagggtatacttcaaaa
gcacctcgttgggcaatcgcttataaatttaaggcagagcaagtttcaacagtattaaat
gaaattacctatcaagtaggtagaacaggagcaataacacctgtagcaaacttagaacct
gtacaattagctggaacgattgtaaaaagagcttcattacataacgccgaccaaatagca
aagttagatgtacgagtaggagacactgtttttgtagaaaaaggaggggaaattatccca
aaaattattgctgttgatttaacaaagcgaccagaagactctgttcctacacaatatgca
acccattgccccgaatgtaatactgaattagtcagaactgatggagatgcaaaacattat
tgcccgaacgaatttggatgtgcgcctcaaattacaggtagaatcaagcattttatcagt
agaaaagccatggatattgatggcttaggaggagaaacggttgatttattacgcaaagaa
ggactgattaaaaactatgcggatttatatgacttaacggtagaacaagtaattccgtta
gagcgaatggctgaaaaatcagcacaaaatatgattgaaggaattgaaaaatcaaaagaa
attccgtttgaaaaagtgttgtttgctttaggaatccgttttgttggcgaaactgtagct
aaaaagttagcaaaacactttaagtcaatcgataatttaatgaatgccgattttgaaaca
ttaatttctgttgatgaaattggtgatagaatagcgcaaagtattattgatttttcgaac
aatttagggaacatagacttaataaaccgattaaaatcacacggagttcagttagaggtc
tctgcagagagcttagaaggacaaacagataaattagcaggaaaagtatttgttgtttca
ggagtttttcatcaaatgagtagaactgaacttaaaaaagcaattgaagataacggtggt
aaggtgtcgagttccatttctaaaaaaactacctatattgtagcaggtgataatatggga
ccgagtaagcttaccaaagctgaaagtttagggattcccatcatttcagaacaagatttt
attgatatgattgcttag
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