Tremella mesenterica: TREMEDRAFT_67336
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Entry
TREMEDRAFT_67336 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tms
Tremella mesenterica
Pathway
tms03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TREMEDRAFT_67336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tms03400
]
TREMEDRAFT_67336
Enzymes [BR:
tms01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TREMEDRAFT_67336
DNA repair and recombination proteins [BR:
tms03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
TREMEDRAFT_67336
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
RNA_ligase
LIG3_BRCT
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
18497811
NCBI-ProteinID:
XP_007001946
JGI:
Treme1_67336
LinkDB
All DBs
Position
Unknown
AA seq
1047 aa
AA seq
DB search
MPPTVWRRDRRISPSTAQDGEEAKSADSGVLPPGPSTLERPKDCVNKNPTPAFSLLCTVM
DRLRSEEMSKRKDTLTRFFNLWRIKVGNDLYPLIRLLLPERDRERPVYNLKEAMLAKCYI
EVLGLDKHSAAAQKLVKWKQPVDGETDGISGDFARVCYHEIAARSTVEEGTLTLEAVNAL
LDQLAGGRMKQAEYVPILRSINRQCTPVEQEWIIRIILKDLRISIREKGVFSCFHPDAAD
LFNVCSDLKRVCWTLYKPDVRLEKNQTNIELFRSFLPQLCYRSPSSAHDAIARLVGAPNQ
EFVMEEKLDGERMQLHMRGNGAQWFYCSRKAKDYTYLYGAHIGEGSLTQHIAGAFHDDVR
NIILDGEMLVWDPQLEKYLAFGVLKTFAQDKIIDDTAPRPCFKVFDILYLNDKCLTGKRL
SERKRLLHSNRVFKDIDQYKGRLEFAAEERGKSGKDIRAMLEKILESRGEGLVVKKLDST
YQTNSRGQDWVKVKPEYADQMGETLDVMVLGGWWGKGGRTGKLSSMLCGLRVQRDDEGDG
GIPQFATFCRVGSGMSYSDYEWILNKHREHWKTFKRSNPPSWMKMGEIGLDDSPDVYIEP
EHSFVMQVKASEIVPATGNFGIGYTLRFPRCKFIFYDTASRDHPVEDPEMERDMWNCLSV
EEFTELLNKPKRKYEDDEQGSKRRKRKPVTRTKVQLISSVKGQLLSQEEVESGIFDNMKF
YVVKGDNKNSKAELEALIHEHGGDFTQAQLSDLSAIVIAPDDKSPLLRAQKKKGVSIVKP
SWIYESIKRKKPLPMIEGLLVFASEDDQAGPLYHKTLDELDEMATRDGSSGADAHEASSG
SRHSSQDARNGMMSAEKGGRPVKSSKQQAMENEWDLDKIAPSTTVTNDVPSRAEDNDEEA
SAESHASDEEIDEPLFPIRSGSTGEGMGDAETNDYDEDKIFNHLVFYIDTTENTKKNGLA
GSPPSSEVIERLDNARKLLIENGGKVVDNINEPKLTHIIMDDDDSSRYGELSWKTSKPKR
KHIVLPSWVTECVEEETLMNEDAHRPR
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgccccctactgtgtggagaagagacaggcgtatatctccttccactgctcaagatggt
gaagaagcgaaatcagcagattctggtgtactcccccccggtccttcaactctggaacgt
cccaaggattgcgtcaataaaaaccccacacctgctttctccctgttatgcaccgttatg
gatcgtttgaggagcgaagaaatgagcaaacgtaaggatacgttgacgagattcttcaac
ctctggcggattaaagtgggtaacgacctctatcctctcattcgattactcttgcccgag
agggatagggaaagacctgtgtataatctcaaagaagctatgcttgctaaatgctacatt
gaggttctggggctggacaagcacagtgcagcagctcaaaaactggtcaagtggaagcaa
cctgttgatggggagacggacggcatctcgggagattttgctagggtctgctatcacgag
atagccgctaggtctacggtggaagaaggaacattgacccttgaagctgtcaacgcttta
ttggatcagcttgccggtggaaggatgaagcaagctgaatatgtcccgatactccgaagc
ataaaccgacaatgtacacctgttgaacaagaatggatcatacgaatcatccttaaagac
cttcgtatttctatccgggagaaaggggtgttttcatgttttcatcccgacgcagctgat
cttttcaacgtttgttcggatctcaagcgtgtatgctggacattgtacaagccagacgtt
cgtttggagaagaatcaaacgaatatagaattattcagatctttcttaccccagctgtgc
tatcgctccccctcttcagcccacgatgcgatcgcgagattggtgggagctcctaatcaa
gagttcgtcatggaagagaaattggatggagaaagaatgcaactgcacatgcgaggtaat
ggagcgcagtggttttactgctctaggaaagcaaaggattacacatacctttacggggcc
catatcggagaaggcagtttgacacaacatatcgcgggcgcctttcatgatgacgtacgt
aacatcatcctcgatggcgagatgttagtatgggatcctcagctcgagaaatatctcgcc
ttcggtgtactgaagacatttgctcaggacaagataatcgacgatacggcgcccagaccc
tgctttaaggtcttcgatatactctatctcaacgacaagtgtctcactggcaaacgactg
tcggaacgtaaacgattactgcattccaatagggtattcaaagatatcgatcagtacaag
ggcaggttggaattcgctgctgaggaaagagggaaatcagggaaagatatccgtgcaatg
ttggaaaagatcttggagtcaagaggtgaaggtctggtagtgaagaaattggacagcacg
tatcagacaaattcccgagggcaagactgggtcaaagtcaaacctgaatatgccgaccaa
atgggagagacacttgacgttatggtccttgggggctggtggggcaagggaggacgtact
ggtaaactatccagtatgctctgtggtctgagggtgcagagggacgatgaaggtgacgga
ggtattccacaattcgccactttttgtcgtgtaggctctggaatgagttattcagactac
gagtggatactgaacaaacatcgagagcattggaaaactttcaaacgctccaatcccccc
tcatggatgaaaatgggcgagataggtttggacgactctccggacgtgtacattgaacct
gaacactcattcgtcatgcaggtcaaagcatccgagattgtccctgccacaggaaacttt
ggtataggttacaccctccgattcccacgatgtaaattcatcttttacgataccgctagt
cgagatcatccagtggaggatcctgaaatggaacgagacatgtggaattgtttgagcgtg
gaagaatttacggagctactcaataaaccgaaacgcaaatatgaagatgatgaacaagga
tcgaagagaaggaaacgaaaaccagtgactaggactaaagttcaattgatttcctctgtc
aaaggtcaacttttgtcccaggaagaagtcgaaagtgggatatttgacaatatgaaattt
tacgttgtgaagggtgataacaagaattccaaggcagaacttgaagcgttgattcatgaa
cacggaggagattttacgcaagctcaattatctgatctttcggcaatcgtcattgcgcct
gatgataaaagtccattgctcagagctcagaaaaagaagggagtcagtattgtcaaacct
agctggatttacgagtctatcaaaaggaaaaagccattaccgatgattgagggacttctc
gtcttcgcttcagaagatgaccaagcgggacctttgtatcacaagactttagacgaactc
gacgaaatggccactcgggatggttcatcaggagccgacgcgcatgaggcttcatctggc
agtcgacatagctctcaagacgcacgaaatgggatgatgtctgctgaaaaaggcggaaga
cccgtaaaatcatctaagcagcaagcaatggaaaatgaatgggatcttgacaagattgca
ccgagtactactgtcaccaatgacgttccctctcgggctgaagacaacgatgaagaagca
tccgctgagagtcatgcgagtgatgaagagatcgacgagcctttgttccccatccgaagt
ggttcaacaggagaaggaatgggtgatgcagagactaacgactatgacgaggataagatc
ttcaatcatttggtattttatattgacactactgaaaataccaaaaagaacggtttggcc
ggttctcccccttcatcggaggtcatcgaaagattggataatgcgaggaagttgttgatt
gagaatggagggaaagtggtggataatataaatgaaccgaaattgactcatatcatcatg
gacgatgatgattcaagtaggtatggagaattgagttggaagacttctaaaccgaaacga
aaacatatagtgttaccgtcttgggtgacggaatgtgtagaagaggaaactttgatgaat
gaagatgctcatagaccacgttga
DBGET
integrated database retrieval system
