KEGG   Tremella mesenterica: TREMEDRAFT_69861
Entry
TREMEDRAFT_69861  CDS       T03139                                 
Name
(RefSeq) hypothetical protein
  KO
K12608  CCR4-NOT complex subunit CAF16
Organism
tms  Tremella mesenterica
Pathway
tms03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tms00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TREMEDRAFT_69861
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tms03019]
    TREMEDRAFT_69861
Messenger RNA biogenesis [BR:tms03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     TREMEDRAFT_69861
SSDB
Motif
Pfam: ABC_tran AAA_21 AAA_29 AAA_25 ATP-synt_ab nSTAND3 AAA_28 RsgA_GTPase AAA_16 AAA_15 AAA_23 AAA_27 Arf SRP54 AAA_22 NACHT MMR_HSR1 FtsK_SpoIIIE
Other DBs
NCBI-GeneID: 18498208
NCBI-ProteinID: XP_007006952
JGI: Treme1_69861
LinkDB
Position
Unknown
AA seq 287 aa
MTDDLLVSAIDVERLTYSFTHDLEPALEDVTLTLHRGSRCLVIGANGAGKSTLLRILAGK
RLIKGAKCSIFGHDVFNNLPGGVVYLGTEWSSNPVVRGDIVVSDFLDSVGGYRHKERRDR
LLRILDVDVDWHMHQISDGERRRVQLCMGLMGHWDVLLLDEVTVDLDVLVRADLIEFLVE
ESKIRNATILYATHIFDGLSSFPTHICHLQLGTALPLLPWPLAIPSGDASTAETDRDPDS
LFHLALEWLREDRNLRRGRDSARGKHRGPKAETTNARTFFEKYDYAH
NT seq 864 nt   +upstreamnt  +downstreamnt
atgacggacgacctcttagtgtcggcgatagatgtagagcgactgacttactctttcacc
cacgatctcgaacctgccctcgaagacgtcactctcactctccacagaggcagtcgttgt
ctcgtcatcggtgccaatggtgctggcaagtcgacactccttcgcatcctcgccggaaag
agattgatcaaaggtgccaaatgcagtatcttcggtcatgacgtcttcaataaccttcca
ggtggcgtcgtctacctcggcaccgaatggtcgtccaatcccgtcgtcaggggtgacatc
gtcgtctctgatttcctcgattcggtgggcgggtacagacataaggagaggagggataga
ttgttgaggatattggacgtggatgtggattggcacatgcaccagatatctgatggtgaa
cggagaagggtacagctttgtatgggtctgatgggtcactgggacgtgcttctcttggac
gaggtgaccgtggatctggatgttctggtccgggcagatctgattgaattcctcgtcgaa
gaatcaaagattaggaacgcaaccattttatacgccactcacatctttgacggtttatcg
tccttccccactcatatatgtcatctccagctcggtactgcccttcccttgcttccctgg
cccctggctatcccgtccggcgatgcttccacagcggaaacagatcgtgatcctgacagt
cttttccatctcgccctggagtggcttcgggaggatcgcaacttgcgccggggacgtgat
tcagccaggggcaagcataggggtccgaaagcagaaacgacaaatgcgaggactttcttt
gaaaagtacgactatgcacattga

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