Tremella mesenterica: TREMEDRAFT_71015
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Entry
TREMEDRAFT_71015 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
tms
Tremella mesenterica
Pathway
tms03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TREMEDRAFT_71015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tms03041
]
TREMEDRAFT_71015
Spliceosome [BR:
tms03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
TREMEDRAFT_71015
Complex C
U5 SnRNP specific factors
TREMEDRAFT_71015
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
MMR_HSR1
EFG_III
EFL1
EF-G_D2
SRPRB
Motif
Other DBs
NCBI-GeneID:
18498448
NCBI-ProteinID:
XP_007002096
JGI:
Treme1_71015
LinkDB
All DBs
Position
Unknown
AA seq
993 aa
AA seq
DB search
MSTEDYDEFGNYIGADLGSDEDDDELDFEPSAPAAASVPGPSTGAGYAPLEGLDEDEPMD
EDGGMEMTLHGVDGTAGNQVILHEDKKYYATAEETYGPDVETMVQEEDLQPLTEPIVAPI
KIRSFTVQEKGLPTTRFDKSFMIDLMNYPSMIRNVTVAGHIHHGKTSLLDMLVFETHQLT
WDVDTPTRYTDTHTLARQRGISIRSAPMSLVLQDSRGKSSLINIIDTPGHVNFVDEIGSV
ARLVDGVVLVVDVVEGVMHGTEQVIRHALQEKLKMVLVVNKMDRLILELRLPPSEAFFKI
KHTIEEVNSMIASIDPDPSLRLSPERGNVAFASTQMAWCFTLRTFASMYADTFGSFNVDD
FAMRLWGNIYFDPERRKFTRKPADVESKRSFVHFILEPLYKLYTQVLSEDAETLKETLAD
LRITLRPSAYKMDVRPLLKVVLEAFFGPSTGLVDMITRFLPSPVDSAEDKIRHTYTGPMG
TDIADSMIKCDPQGPTVIHVTKLYHTSDAQEFRAFGRVMSGTIRRGQTVKVLGESYSLED
EEDMVSATVDALALDESRYTVDIDSAPAGSLVLISGVDASITKTATIVSPSIEDDLYIFR
PIKHITQSVLKVAVEPISPSELPKMLDGLRKVNKAYPLVVTKVEESGEHVILGTGELYLD
CVLHDLRKLFSEIEIKVSDPVTKFCETVVETSALKCYAETPNKKNKITMISEPLETGIAN
DIESGKVTMRMSNKERGKFFESNYQWDLLASRNIWAFGPEDNGPNVLINDTLPSEVDTRL
LSSVRESVKQGFQWGTREGPLCDEPIRGVKFRILDATLAPEPIYRGGGQIIPTARRVCYS
SFLLATPRLLEPVYYVEVQAPADCVAAVYTVLSRRRGHVTRDMPKPGSPLYTVKASIPVL
DANGFETDLRTATMGQAFCQMSFDHWQVVPGDPTDTSIQLRPLEPATGQSLARDLMLKTR
RRKGLSDSIAVSKYLEDETIIAISASGNADLLG
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacagaagactatgacgagttcgggaattatatcggtgcagacctcgggtcagac
gaggacgacgatgaactcgactttgaaccttctgccccggcagctgcgtccgtaccgggg
ccatcgacaggagctgggtatgctcctctagagggtttggacgaggatgagccgatggat
gaggatggtgggatggagatgactttgcatggtgtggatggtacggcaggaaaccaagtc
atcctacacgaagacaaaaaatactatgccacagcggaagagacgtacggtccggacgtt
gagaccatggttcaagaggaagatctgcaaccattgacagaacctatcgtggcgcctatc
aaaatacggagttttaccgttcaagaaaaaggacttcctacgactcgttttgacaaaagt
ttcatgatagatctcatgaattacccttctatgatacgtaatgtcacggtggctggacat
atacatcatggcaagacttctcttctggatatgctagtttttgaaactcatcaacttaca
tgggacgtcgatacacctacacgttatactgacacccatacactggcccgacaaagaggc
atatctattcgttccgctcccatgtcactcgttctccaagattctcggggcaaatcatct
ttgataaatattatcgacacacccggtcatgtcaatttcgtcgatgagatagggtctgtg
gcacggttggtagatggggttgtgttggtggtggatgtggtggaaggagtgatgcacggc
acggaacaggtcattagacatgctttgcaggagaaattgaagatggttttggtggtgaat
aagatggatagattgatattggaattgagattaccaccgtcagaagccttcttcaagata
aaacataccatagaggaggtgaactcgatgatagcctcaatagatcccgacccttccctc
cgcctctcacccgaacgaggtaacgtcgcattcgcctccactcaaatggcttggtgtttc
acacttcggacatttgcctcgatgtacgcagacacgttcgggtctttcaatgtggatgat
tttgccatgcggttgtggggtaacatctacttcgatcctgaaagacgcaaattcacgaga
aaacctgccgacgtggaaagcaagagatcattcgtgcatttcatcctggagccattatac
aagttgtacactcaggttctctcagaagatgccgaaacactcaaagaaaccctcgccgac
cttcgtatcacactccgaccatcagcatacaagatggatgttcgacctttacttaaagtc
gttcttgaggctttcttcggtccatcgacaggacttgttgatatgatcacccgtttcctt
ccttctcccgtggacagtgctgaagataagattcgacatacatataccggacctatgggt
accgatatcgccgactctatgatcaaatgtgatcctcaaggtcccaccgtgatccacgtc
accaaactgtatcacacttccgatgctcaagaattccgcgcctttggtcgagtgatgagc
ggtaccatccgtcgcggtcaaacggtcaaagtcctaggagaaagctacagtctggaagat
gaagaagatatggtttctgctactgttgacgcgttggcattagacgaatcaagatacacc
gtcgatatcgattccgctcctgccggttcattagttttgatatcaggtgtggatgcttcc
attacgaaaacagcaacgatcgtatctccttccatagaagacgatttgtatatattcaga
cctataaaacacatcactcaatcagtattaaaagttgccgtggaacctatatcaccttcc
gaattaccaaagatgttagatgggttgagaaaggtcaacaaggcttatccgttagtagtg
actaaagtggaagaatcaggggaacatgttatattagggacgggagagttatatctggat
tgtgtgctacatgatctgaggaaattatttagtgaaatcgagatcaaggtttcggatcca
gtcaccaaattctgcgagacggtagtggagactagtgcgttgaaatgttatgcggagacg
cctaataagaaaaacaaaatcacaatgatatcagaaccattagaaacaggtatagccaat
gacatagaatctggtaaagtcacaatgcgtatgtctaacaaagaacgtggcaagttcttt
gaatcgaattatcaatgggatctgttggcatcacgaaatatttgggcattcggaccagaa
gataatggtccgaacgtattgataaatgatactttgccttcggaggtcgacacgagactg
ttaagtagtgtacgagaaagtgtcaagcaaggttttcaatggggaacgagagaaggacct
ttgtgtgatgaacccatccgcggggtaaaattccgtattctcgacgccaccctcgcaccc
gaacctatatatcgaggtggtggtcaaataatcccaacagctcgtcgcgtttgttattct
tcttttcttctagcaactcctcgattactcgaaccagtttattacgtcgaagttcaagct
cctgcagattgcgtagcagcagtttataccgttttatcacgtcgaagaggtcatgtcact
cgtgatatgccaaaacctggatcaccattatatactgtcaaagcttcgatacctgtttta
gacgctaatggtttcgaaacggatttacgtacggcaactatgggacaagcattttgtcaa
atgtcttttgatcattggcaagtggtacctggtgatccgacagatacaagtatacaatta
agacctttggaacctgctacaggacagagtttagctagggatttgatgttgaaaactagg
agaagaaaaggtttgagtgatagtattgccgttagcaagtatttggaagatgagacaatc
atcgctatcagcgcttcgggtaatgccgatttactaggatag
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