Trichechus manatus latirostris (Florida manatee): 101340478
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Entry
101340478 CDS
T05135
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
101340478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmu03400
]
101340478
Enzymes [BR:
tmu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101340478
DNA repair and recombination proteins [BR:
tmu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
101340478
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
ATG17_like
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
101340478
NCBI-ProteinID:
XP_004382993
UniProt:
A0A2Y9RMI3
LinkDB
All DBs
Position
Unknown
AA seq
915 aa
AA seq
DB search
MASAAASQTSRAVASHVPFADLCSNLERIQRSKGREEKIRHFKEFLDSWRKFHDALHKNQ
KDVPDSFYPAMRLILPQLERERMAYGIKETMFAKLYIELLNLPREGKDALKLLNYRTPTG
TRGDTGDFAMIAYFVLKPRCLQKGSLTIQQVNDILDSVASNNAAKRKNLVKKSLLQFIAQ
SSALEQKWFIRMILKDLKLGVSQQAIFSVFHNDATELYSVTTDLEKVCRQLHDPSVGLSD
ISITLFSAFRPMLAAIADIQHIEKDMKHQSFYIETKLDGERMQMHRDGDVYKFFSRNGYD
YTDQFGDSPQKGSLTPFIHSAFKTNIQNCILDGEMMAYNPDTQSFMQKGNKFDIKRMVED
SDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPVPGRIEIVQRTPAHTKTEVIDA
LNEAIDKREEGIMVKYPLSIYKPDKRGEGWLKIKPEYVSGLMDELDILIVGGYWGKGSRA
GMMSHFLCAVAEKPPPGGKPSVFHTLCRVGSGYTMKELYDLGLKLANHWKPFHRKAPPSS
ILCGTEKPEVYLEPCNSVIVQVKAAEIVPSDMYRTDCTLRFPRIEKIREDKEWHECMTLD
DLEQLRGKASGKLASRHLYIDGDDEPQEKKRKAAAPKMRKVIGIIEHFKAPNLSNVNKVS
NIFEDMEFCVMSGVDGHSKPDLENRIAEFGGYIVQNPGPDTACVIAGSENIRVKNIISSN
KHDVVKPDWLLECFKTKSCVPWQPRFMIHTCPSTKQHFALEYDCYGDSYFVDTDLKQLKE
VFSVIKHSNEQTSEEMASAIADLEYRYSWDSSPLSMFRHHMIYLDLYATVNDLSTKIEGT
RLATKALELRFHGAKVVSCLAEGVSHVIVGEDHSHVAHFKAFRRTLRRKFKILQEAWVTD
SIDRCELQEEDQYLI
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcggctgcttcacaaacttcgagagctgttgcgtcacatgttccttttgca
gatttatgttcaaatttagaacgaatacagagaagtaaaggacgtgaagaaaaaatcaga
catttcaaggagtttttagattcttggagaaaatttcatgatgcccttcataagaaccaa
aaagatgtcccagactctttttatccagcaatgagactcattcttcctcagctagagaga
gagaggatggcctatggaatcaaagaaactatgtttgctaagctttatattgaattactt
aatttgcctagagaaggaaaagatgctcttaaacttctaaattacagaacgcctactgga
actcgtggagatactggagacttcgcaatgattgcatactttgtgttgaagccaagatgt
ttacagaagggaagtttaaccatacagcaagtaaatgacattttagactcagttgccagc
aataatgctgccaaaagaaagaacctagtaaagaagagtcttcttcaattcatagctcag
agttcagcccttgaacaaaaatggttcatacgaatgattctaaaggacttaaagctcggt
gttagtcagcaagctatattttctgtttttcataatgatgctactgagttgtatagtgtc
accacagatctggaaaaagtctgcaggcaactgcatgatccttcagtaggactcagtgat
atttctatcactttattttctgcctttagaccaatgctagctgctatagcagatattcag
cacattgagaaggacatgaagcaccagagtttctacattgaaaccaagctagatggcgag
cgtatgcaaatgcacagagatggggatgtgtataaattcttctcccgaaacgggtatgac
tatacggatcagtttggtgattctccgcagaaaggttctctaacaccattcattcacagt
gctttcaaaacaaatatacaaaactgtatccttgatggtgagatgatggcctacaatcca
gatactcaaagttttatgcaaaagggaaataagtttgatattaaaagaatggtagaagat
tctgatctgcagacttgttactgtgtttttgatgtattgatggttaataataaaaagcta
ggacatgagaccctgagaaagaggtatgaaattcttagcagtatttttacaccagtacca
gggagaatagaaatagtgcagagaacaccagcacatactaagacagaagtaattgatgct
ttgaatgaagcaatcgataaaagagaagaggggatcatggtaaaataccctttgtccatt
tacaagccagacaaaagaggtgaaggatggttaaaaattaagccagagtatgtaagtggt
cttatggatgaactggacatcttaattgttggaggctattggggtaaaggttcacgggct
gggatgatgtctcattttctgtgtgccgtggccgagaagccccctcctggtggaaaaccc
tctgtgtttcacactctctgtcgtgttggctcaggttacaccatgaaagaactctatgac
ctgggtttgaagttggccaaccactggaagccttttcatagaaaagctccaccaagtagc
attttatgtggaactgagaagccagaagtataccttgagccttgtaattctgtcattgtt
caggttaaggcagcagagattgtccccagtgacatgtatagaactgattgcaccttgcgt
tttccacggattgaaaagataagagaagacaaagagtggcatgaatgcatgactctggat
gacttagagcagcttagggggaaagcgtctggaaagcttgcatctagacacctttacata
gatggtgatgatgagccacaagaaaaaaagcggaaagctgctgccccaaagatgaggaaa
gttattgggattattgaacacttcaaagcacctaatctttctaatgtaaacaaagtttct
aatatatttgaagacatggagttttgtgttatgagtggagtagatgggcattcaaagcct
gatctggaaaacagaattgcagaatttggtggttatatagtacaaaatccaggcccagac
acagcctgtgtaattgcagggtctgagaacatccgagtgaaaaacataatttcttcaaat
aaacatgacgttgtgaagcctgactggcttttagagtgttttaagaccaaaagctgtgtg
ccatggcagcctcgctttatgattcatacgtgtccatcaacaaaacaacattttgctctt
gagtacgattgctatggtgatagttattttgttgatacagatttgaaacaactcaaggaa
gtgttctcagtaattaaacattctaatgaacagacttctgaggaaatggcttcagcgatt
gctgatttagaatatcgatattcctgggacagctctcctctcagtatgtttcgacaccac
atgatttatttggacctgtatgccactgttaatgacttgagtaccaaaatcgaaggaaca
agattagctactaaagcattggaacttcggtttcatggggcaaaagtagtttcttgttta
gctgaaggagtttctcacgtaattgttggggaggatcatagtcatgttgcacattttaaa
gctttccggaggactcttagaagaaagtttaaaatcctacaagaagcttgggtaactgat
tcaatagacaggtgtgaattacaggaggaagatcagtatttgatttaa
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