Trichechus manatus latirostris (Florida manatee): 101343627
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Entry
101343627 CDS
T05135
Name
(RefSeq) agrin
KO
K06254
agrin
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu04512
ECM-receptor interaction
tmu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101343627
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
101343627
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tmu00535
]
101343627
Proteoglycans [BR:
tmu00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
101343627
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Laminin_G_1
Kazal_2
Laminin_G_2
Kazal_1
NtA
EGF_laminin
Kazal_CFAI
SEA
EGF
hEGF
Motif
Other DBs
NCBI-GeneID:
101343627
NCBI-ProteinID:
XP_012413301
UniProt:
A0A2Y9G1W1
LinkDB
All DBs
Position
Unknown
AA seq
2047 aa
AA seq
DB search
LLLLLVVAASVLPGAGGTCPERALERREEEANVVLTGTVEEILNVDPVQHTYSCKVRVWR
YLKGKDVVTPESLLDGGNKVVIGGFGDPLICDNQVSTGDTRIFFVNPAPPYLWPAHKNEL
MLNSSLMRITLRNLEEVEHCVEDKPGTHFTPAAPTPPDACRGMLCGFGAVCELSAEGPGR
ASCVCKKSACPSVVAPVCGSDASTYSNECELQRAQCSQQRRIRLLSRGPCGSRDPCSNVT
CSFGSTCTRSADGQTAVCLCPTSCPGASEGTVCGSDGADYPSECQLLRRACARQENLFKK
FDGPCDPCQGTPDDLSHMCRVNPRTRQPEMLLRPESCPPRQAPVCGDDGVTYDSDCVMGR
TGAAHGILLQKVRSGQCHPRDQCLEPCQFHAVCLSRRGRTRCSCDRVTCDGAYKPVCAQN
GHTYDNECWLHQAECQQQRTIPVRHQGPCGQPPSPCLGVQCPFGAMCAVKNGEAACECPQ
ACPGIYDPVCGSDGITYGSACELAATACALGRETRVARRGPCDRCGQCHFGALCEAETGR
CVCPSECVASAQPVCGSDGRTYASECELHVAACTRQISLHVATAGHCQACGDMVCAFGAV
CSAGQCVCPQCEHPPPGPVCGSDGITYRSSCELREASCRQQTHIEEARAGPCELAECGSG
GSGSGEDGECEPELCRQRGGVWDEDSEDGPCVCDFSCQSVLRNPVCGSDGVTYGTECELK
KARCESQRELYVAAQGACRGPTAAPLPPMAPLHCTQTPYGCCQDNVTAARGVGLAGCPSV
CQCNPHGAYGGSCDPASGQCSCRPGVGGIKCDRCEPGFWNFRGIVTDGRSGCTPCNCDPW
GAVRDDCEQMSGLCSCKPGVAGPKCGQCPDDRALGPTGCEADSVAPVTCAEMHCEFGASC
MEETGSARCVCPTPTCLEANATKVCGSDGVTYGDECQLRTIACRQGLDISVQSLGPCQDS
IAPSAHPTPAATTRPVTRGALLAAPSALSLGPSSTPHSQPTPRPSARPWTTASVPRTTGR
PALTVPPTASSTAASLATSAFGESGSADGGSGDEDLSGDLEASGAGSGGLELPEGGSAVT
PGPPIERASCYNSPLGCCSDGTTASLDAEGSNCPATKAFQGVLELDEVEGQELFYTPEMA
DPKSELFGEMARSIESALDDLFRNSDVKKDFRSVRLRDLGPGNSVRAIVDAHFDPTTTFR
APDVGRALVRQIQASRRRSLVVKRPLQEHVHFMDFDWFPAFFTPGATTAMAGATTAAHLP
SASVTPRALYPTHMSLSRTTAPTITRRPSTTTPSHVPGRRPLLPGTPRPPQPCDSQPCLH
GGTCQDRDAGRAFSCSCPLGRGGTVCETVLRPAVPAFRGHSFLAFPTLRAYHTLRLALEF
RALEPQGLLLYNGNARGKDFLALALLGGRVQLRFDTGSGPAVLTSSVPIEPGRWHRLELS
RHWRQGTLSVDGETPVLGESPSGTDGLNLDTDLFVGGVPEDQATVVLERTSVSAGLRGCI
RLLDINNQQLELSSPGAAARSAGVGKCGNDPCLPNPCHGDAPCQALEDDMFLCQCPPGRF
GPTCADEKSPCLPNPCHWAAPCRVLPGGGAKCECPLGRGGALCEIASEQDDSWPFLADFN
GFSYLELKGLHTFERDLGEKMALEVVFLARGPNGLLLYNGQKTDGRGDFVSLALHSRHLE
FRYDLGKGAAVIRSKEPVALGTWTRVSLERSGRKGALRVGDGPRVLGESPKSRKVPHTVL
NLKEPLYVGGVPDFSKLARAAAVSTGFDGAIQMVSLKGRQLLTKENLLRMVDVSSFVDHP
CTRPSGHPCLNGASCLPREAKYECLCPAGFSGPHCEKGLIEKSAGDLDTLAFDGRTYIEY
LNAVTESELTNEIPAPEAPDPGASHSEKALQSNHFELSLRTEATQGLVLWSGIATERADY
MALAIVDGHLQMTYDLGSQPVVLRSTVPVNTNRWLRVKAHRAQREGSLQVGNEAPVTGSS
PLGASQLDTDGTLWLGGLEKLPVGQGLPKAYSTGFVGCLRDVVVGRRPLHLLEDAITKPQ
LRPCPAS
NT seq
6144 nt
NT seq
+upstream
nt +downstream
nt
ctgctgctgctcctggtggtggctgcgagcgtcctgcccggagctggcgggacctgcccg
gagcgggcgctggagaggcgggaggaggaggcgaacgtcgtgctcacgggcacggtggaa
gagattctcaacgtggacccggtgcagcacacgtactcgtgcaaggttcgggtctggcgg
tacctgaagggcaaagatgttgtaaccccggagagcctgctggacggtggcaacaaggtg
gtgattggtggctttggagaccccctcatctgtgacaaccaggtgtccactggggacacc
aggatcttttttgtgaaccctgcacccccatacctgtggccagcccacaagaatgaactt
atgctcaactccagcctcatgcggatcaccctgcgtaacctggaggaggtggagcactgt
gtggaagataaacccgggacccacttcacaccagcagccccgacgcctccagatgcgtgc
cgggggatgctgtgtggcttcggtgccgtgtgtgagctgagtgcagagggcccaggccga
gcctcctgcgtgtgcaagaagagcgcttgccccagcgtggtggcccccgtgtgcggctcc
gacgcctccacctacagcaacgagtgcgagctacagcgggcacagtgcagccagcagcgc
cgcattcgcctgctaagccgcggcccctgcgggtcccgggatccctgctccaacgtgacc
tgcagcttcggcagcacctgcacccgctcggctgacgggcagacagccgtgtgcctgtgc
cccacctcctgcccaggggcttccgagggcacagtgtgtggcagcgacggtgctgactac
cccagcgagtgccagctcctgcgccgtgcctgtgcccgccaggagaacctcttcaagaag
ttcgacggcccttgcgacccttgccagggcacccccgacgacctgagccacatgtgccgg
gtgaatcctcgcactcggcagccggagatgctcctgcggccagagagctgccccccacgg
caggcacctgtgtgcggtgacgacggtgtcacctatgacagcgactgtgtgatgggccgc
actggggctgcccatggcatcctcctccagaaagttcgctccggccagtgccatccacga
gaccaatgcctggagccctgccaatttcatgctgtgtgtctgtcccgccggggtcgcacc
cgctgctcctgcgaccgagtcacttgtgatggcgcctacaagccagtgtgtgcccagaat
gggcacacatatgacaacgagtgctggctccaccaagctgagtgccagcagcagcgtacc
atccctgtgaggcaccagggcccgtgtggccagcccccgtccccgtgcctcggggttcag
tgcccatttggggcaatgtgcgccgtgaagaacggcgaggctgcgtgtgagtgcccgcag
gcatgcccaggcatctacgaccccgtgtgcggcagtgacggcatcacgtatggcagcgcg
tgcgagctggcagccacggcctgtgcccttggccgagagacacgtgtggcaagaagaggg
ccctgtgaccgctgtgggcagtgccacttcggggccctgtgtgaggcggagacagggcgt
tgtgtgtgcccttctgagtgtgtggcctcggcccagcctgtgtgtggctccgatgggcgc
acctacgccagtgagtgtgagctgcacgtggctgcctgcacccgccagatcagccttcac
gtggccacagctggacactgccaagcctgtggggacatggtgtgtgcctttggggccgtg
tgctcggcggggcaatgcgtatgtccgcagtgcgagcaccccccacctggccctgtgtgc
ggcagtgatggcatcacctaccgtagctcatgcgagctccgcgaggcatcctgccggcag
cagacacacatcgaggaggcccgggcagggccctgcgagctggctgagtgcggttcagga
ggctctggctccggggaggatggtgagtgtgagcccgagctgtgccggcagcgtggcggt
gtctgggacgaggactcagaggatgggccatgtgtctgtgacttcagctgccagagtgtc
ctgcggaacccagtttgtggctctgatggggtcacctatggcactgagtgtgagctaaag
aaggccaggtgcgagtcacagcgagaactgtacgttgcggctcagggagcctgccgaggc
cctactgccgccccattgccgcccatggctcccctacattgcacccagacaccctacggc
tgctgccaggacaatgtcactgctgcccggggcgtgggactagctggctgccccagtgtg
tgccagtgcaaccctcacggcgcctatggtggctcctgtgatccagcctcgggccagtgc
tcctgccgccctggtgtagggggcatcaagtgtgaccgctgtgagcctggcttttggaac
ttccgtggcatcgtcaccgatggccggagcggctgcaccccctgcaactgtgacccctgg
ggtgccgtgcgggacgactgtgagcagatgagcgggctatgctcctgtaaacccggggtg
gcgggtcccaagtgcgggcagtgtccagatgaccgggccctaggtcccactggctgtgaa
gcagactctgtggcacctgtgacctgtgcggagatgcactgtgagtttggagcctcctgc
atggaggaaactggctctgcccgctgtgtgtgcccgacgcccacatgtctggaggccaat
gcaaccaaggtctgtgggtcagacggcgtcacctatggtgacgaatgtcagctgaggacc
atcgcctgccgccagggcctggacatctctgtccaaagcctcgggccctgccaggactcc
atcgctcccagcgcccacccgacacctgcagccaccaccaggcctgtcacgcgtggggca
ctgctggccgcccccagcgccctctccctgggtcctagtagtaccccccacagccagccc
acccctcgaccctcagcacgaccatggaccacagccagcgtacccaggaccacagggcgg
ccagcgctgactgtgccccccacggcctcctccacggcggccagcctggccacatcagcc
tttggtgaatcaggcagtgccgatggtgggagtggcgacgaggacctgagtggggacctg
gaggccagtggagccggctctgggggacttgagcttcccgagggtggcagtgctgtgacc
cctggaccacccattgaaagggcttcctgctataactcgcctctgggctgttgctcagat
gggacaacagcctcgctggacgcagagggctccaactgcccagccaccaaggcattccag
ggcgtgctggagctcgacgaggtcgaggggcaggagctgttttacacgcctgagatggct
gaccccaagtcggagctgtttggggagatggcacggagcatcgagagtgcattggatgac
ctcttccggaactcggatgtaaagaaggacttccggagcgtgcgcctgcgggacctgggg
cctggcaactcagtccgtgccatcgtggatgcccactttgatcccaccacgaccttcaga
gcacccgacgtgggacgagccttggtcaggcagatccaggcatcgcggcgcaggtccctg
gtggtgaagaggccactgcaggagcacgtgcacttcatggacttcgattggtttcctgca
ttcttcaccccgggagccaccactgccatggctggagccactactgctgcccacctgccc
tctgcctctgtgaccccccgggccctgtaccctactcacatgagcctcagcagaaccaca
gcccccaccatcacccgccggccctccaccactaccccaagccatgtgcctggacgccgg
cccctgctcccaggcaccccacggcccccacagccctgtgactcgcagccctgccttcac
ggtgggacctgccaagaccgggatgctggccgggctttcagttgcagctgccccctgggc
agggggggcactgtctgcgagacggtgttgcgccctgcggtgccagctttcaggggccac
tccttcctggccttccccacactgcgcgcctaccacacactgcgcctggcacttgagttc
cgggcgctggaaccacaggggctgctgctctacaatggcaatgcccgtggcaaggacttc
ctcgcgctggctctgctggggggacgcgtgcagctcaggtttgacactggctctgggcct
gccgtgctaaccagctcggtgcccattgagccaggccgctggcaccgcctggagctgtca
cggcactggcgccaggggacactctcagtggatggcgagacccccgtacttggcgaaagc
cccagtggcactgatggtctcaacctggacacagacctctttgtgggtggtgttcccgag
gaccaggccactgtggtgctagagcggacctcagtcagcgctggcctgcggggctgcatc
cgcctactggacatcaacaaccagcagctggagctgagtagtccgggggctgcagcccgc
agtgctggtgtgggcaagtgcgggaatgacccctgcctgcccaatccctgtcatggtgac
gccccatgccaggccctggaggacgacatgttcctctgccagtgcccgcccggccgtttt
ggcccgacttgcgctgatgaaaagagcccctgccttcccaacccctgccactgggcagcc
ccctgccgcgtgctgcccgggggtggagccaagtgcgagtgccccctgggacgcgggggt
gccctctgcgagatagcctcagagcaggatgactcctggccctttctggctgacttcaat
ggcttctcctacctggagctgaaaggcctccacacctttgagcgtgacctgggggagaag
atggcgctggaggtagtcttcctggcccgtggccccaacggcctgctcctctacaatggg
cagaagacagacggccggggggactttgtgtccctggcgctacacagccgccacctggag
ttccgatacgacctgggcaagggggcagcagtcatcaggagcaaggaaccagtggccctg
ggcacctggacccgggtctcgctggagcgcagtggccgcaagggtgccctgcgtgttggc
gatgggccccgagtgctgggggagtccccgaaatcccgcaaggtgccgcacacggtcctc
aacctgaaggagccgctctacgttgggggtgtccctgacttcagcaagctggcccgggct
gctgctgtatccacaggctttgacggcgccatccagatggtctccctgaaaggccgccag
ctgctgaccaaggagaacttgctgcggatggtggatgtctcatcctttgtggaccatccc
tgcacccggccctcaggccacccctgcctcaatggggcctcctgcctcccacgggaggct
aagtacgagtgcctgtgtcctgcgggcttttcggggccacactgcgagaaggggctgatc
gagaagtcagcaggggacctggacacgctggccttcgatgggcgaacctacattgagtac
ctcaacgctgtgactgagagcgaactgactaatgagatcccagcccccgaagctccggat
cccggggcctctcacagtgagaaggcactgcagagcaaccactttgagctgagcctgcgc
acagaggccacacaggggctggtcctgtggagtggcatagccacggagcgagcagactac
atggcgctggccatcgtggatgggcacctgcagatgacctatgacctgggctcccagccc
gtggtgcttcgctccactgtgcctgtcaacaccaaccggtggctgcgggtcaaggcgcac
agggcacagagggaaggctccctacaggtgggcaatgaggcccctgtgaccggctcctcc
ccgctgggcgcctcgcagctagacacagacggaaccctgtggctggggggcctggagaag
ctgcctgtaggccaggggctgcccaaggcctacagcactggcttcgtgggctgcctgcgg
gatgtggtggtgggccggcgcccactgcacctgctggaggatgccatcaccaagccccag
ctgcggccgtgccctgcgtcctaa
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