Trichechus manatus latirostris (Florida manatee): 101352494
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Entry
101352494 CDS
T05135
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tmu03036
]
101352494
03400 DNA repair and recombination proteins [BR:
tmu03400
]
101352494
Chromosome and associated proteins [BR:
tmu03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
101352494
DNA repair and recombination proteins [BR:
tmu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
101352494
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
ChuX_HutX
IFT20
Motif
Other DBs
NCBI-GeneID:
101352494
NCBI-ProteinID:
XP_023598666
UniProt:
A0A2Y9RYQ4
LinkDB
All DBs
Position
Unknown
AA seq
1814 aa
AA seq
DB search
MYEYYASEGQNPLPFALAELIDNSLSATSRNNGIRRIQIKLLFDEAQGKPAVAVIDNGRG
MTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAVFFVGQ
SARMISKPADSQDVHELLLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITNDDERFLHH
LILEEKEKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGNEIRTSKEV
GPFNNIDIEISMFEKGKAPKIVNLREIQDDMQTLYINTAADSFEFKAHVEGDGVVEGIIR
YHPFLYDRETYPDDPCFPSKLKDEDDDDDCFIIEKAARGKRPIFECFWNGRLIPYTSVED
FDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFTRILNG
QEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRPDLPSKRQGPWATYSAIEWDGKI
YKAGQLVKTIKTLPLFYGSIVRFFLHGDHDGEVYATGGEVQIAMEPQALYDEIKTVPIAK
LDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRIEILNKKGE
AMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENIQKLGNY
TLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDSPFRVGVPFNIPLEFQ
DEFGHTSQLVTDIQPVLEASGLSLHYEEITNGPNCVIRGVTAKGPVNSCQGKNFNLKVIL
PSLKEDSQILKIRLLPGPPRRLKVKPDSEILVIENGTAFPFQVEVLDESDNITAQPKLIV
HCKFSGAPNLPLYVVDCSSSGTSILTGPAIQVQNIKKDQTLKARIEIPSCKDVAAVEKTI
KLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDVMHNLIFQMYDEGEREIDITSALA
EKIKVNWTPDINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRPLPDEP
KHLKCELKGGKTVQMGQELQGEIVVIVTDQYGNQIQAFSPSSLSALGIAGVGLDSSNLKM
TFQENTESISVRGIKFVPGPPGNKDLCFTWREFSDFIRVKLISGPPAKLLLIDWPELKES
IPVINGKELQNPLIVQLCDQWDNPAPVPQVKISLIKANNLKLTPSNQQHKTDEKGRANLG
VFSVSAPRGEHIIQIKAIHNKNTIEGPVIKLMILPDPEKPIRLNVKYDKDASFLAGGLFT
DFMISVISEDDSVIKNINPARISMKMWKLPSPGNRPPANAETFSCNKIKDNDKEDGCFYF
RDKVIPHKVGTYCIQFGFMMDKAYTLSSEQVIVDVLPNQPVKLVPEIQPATPAVSNVRSV
VSRTLVRDLHLNITDEYSNHTGIDLVGTVIATIKGSSEEDTDVPLFIGKVKTLEFPFVNG
SAEITSLVLAENSPGRDSTEYFIIFEPQLPALSRTLEPYILQFMFYNDVKKQQQMAALTK
EKDQLSKSIIMYRSLFEASKQLLDEMKCQVEEAKLKEAQLRNELKAHNIDIPATQQMTHI
EALLKRKVTEQEELKKKPRRSCTLPNYTKGSADVLGKIAHLAQIEDDRAAMVISWHLASD
MDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHLRNGKLCFKPIGDPI
FARDLLTFPDNKEHCETVFGMLLGDTIILDNLDAANHYRREVSSLHMFQLSRVLLVFGFF
ADLLQQYRSAVCKLGSVNKDLNGQLEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMCLVF
VNMYFLCLEINIYD
NT seq
5445 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaatattatgcgagtgaaggacaaaatcctttgccatttgctcttgcagaatta
attgataattcactgtctgctacttctcgtaacaatggtataagaagaatacagataaaa
ttgctttttgatgaagcacaaggaaaacctgctgttgcagtgatagataatggaagagga
atgacctctaaacagttaaacaactgggctgtatataggttgtcaaaatttacaaggcaa
ggcgactttgaaagtgatcattcaggatatgttcgtccagtaccagtgccacgcagctta
aatagtgatatttcctattttggtgttggcggcaagcaggctgttttctttgttggacaa
tcagccagaatgataagcaaacctgcagattcccaagatgttcatgaacttctgctttct
aaagaagactttgaaaagaaggagaaaaataaagaggcaatatacagtggatatattaga
aacagaaagccatctgattctgttcacattacaaatgatgatgaaagatttctacaccat
cttatcttagaggagaaggaaaaagatagctttactgctgtggttatcacaggagtacaa
ccagagcacatacagtacttgaaaaattatttccatctttggacacgacagttagcgcat
atttatcattactatattcatggcccaaaaggaaatgaaattcgtacatcaaaagaagtt
ggacctttcaacaacatagatattgaaatttctatgtttgaaaaagggaaggcacctaag
attgtcaacctaagggaaatacaagatgacatgcagacgttgtatataaacacagcagct
gatagttttgagttcaaggctcatgttgaaggagacggtgtagtggaagggattatccga
tatcatcctttcttatatgatagagaaacttaccctgatgatccatgctttccgtcaaaa
ctaaaagatgaagatgatgatgatgattgtttcataattgagaaagcagcaagagggaaa
aggcctatttttgaatgtttttggaatggacgattaataccatatacatctgttgaagac
tttgactggtgtactcctcctaagaagagagggctggcaccgatcgaatgctacaataga
atatctggtgcactattcactaatgacaaatttcaggtcagcacaaataagctgactttt
atggatcttgagctaaaattgaaagataagaacaccctgtttacaaggatcttaaatgga
caggaacagcgaatgaaaattgacagagaatttgctttatggctgaaggactgtcatgaa
aaatatgacaaacagataaaatttacactctttaaaggaataattacacgtcctgatctc
ccctctaaaaggcagggcccctgggccacgtactcagccatagaatgggatggaaaaata
tacaaagcaggacagctggttaagacaatcaagacacttcccctcttttatggaagcata
gtaagattttttcttcatggcgatcatgatggagaagtatatgctacaggaggagaggtt
caaattgcaatggaacctcaagcattgtatgatgaaataaaaactgtaccaattgcaaaa
ctggataggacagttgctgagaaggctgtaaaaaaatatgtagaagacgaaatggcaagg
ctccccgatagattgtcagtaacttggcctgaaggagatgaattactgccaaatgagatc
aggcctgctggaacccctattggtgcattaagaattgaaatactgaataaaaaaggggaa
gcaatgcaaaagcttccaggaacgagtcatggaggatcaaagaaactcctggttgagctc
aaagttatattacactcttcaagtggaaataaagaaataatttcacatattagtcaacat
ggaggaaagtggccttactggtttaaaaaaatggaaaatattcaaaaattggggaattat
acattgaaattacaagttgtgttgaatgaaagtaatgcagacacttatgcaggaagacca
ctaccatctaaagcaattaaattttctgttaaagagggtaagccagagaaattttcattt
ggtcttctggattctccttttcgtgttggagtgcctttcaatatccctctggaatttcag
gatgaatttggtcataccagtcaactagtaactgatattcaaccagttcttgaagcaagc
ggcttgtctctacattatgaagagataacaaacggaccaaactgtgtaattcgaggtgtt
acagctaagggccctgtaaactcttgtcaaggcaagaattttaatctcaaggttattctg
ccaagtttaaaagaagactcacagattttgaaaattagattactacctggtccccctcgt
cgattgaaagtaaaacctgactctgaaattttagtaatagaaaatggaacagctttccca
tttcaggtggaagttttggatgaatcagacaatataacagcacaaccaaaactgatagtt
cattgtaagttttctggtgctccaaacctgccactgtatgttgtggattgcagtagttct
ggaactagtattttaactggacctgcaattcaagttcagaatattaaaaaagaccagaca
cttaaagcaagaattgaaataccgagttgtaaagatgtggctgctgttgagaagactatt
aagttgcttcccagtagccatgttgccagactgcagatattcagtgtggaaggacaaaag
gcaatccagatcaaacatcaggatgaggttaattggatagcaggcgatgttatgcataat
cttatttttcaaatgtatgatgaaggagaaagagaaattgacataacatcagctttagca
gaaaaaattaaagttaattggactcctgatattaacaaagaacacttgctccagggtctg
cttcctgatgtacaagtaccaacatctgtaaaggatatgcgttattgccaggtttcattc
caagatgatcatgtgtctttggaaagtgcatttacagtaaggccacttcctgatgaacct
aaacatctaaaatgtgagttaaaaggaggaaaaacagtacagatgggccaagaacttcaa
ggagaaatagttgtaatagtgacagatcagtatggaaatcagattcaagcattttcacca
agttctttatctgctttgggaattgctggggttggacttgatagctcgaacttgaaaatg
acttttcaggaaaacacagaaagtataagtgtaagaggcatcaaatttgttccaggtcct
cctggaaataaggatctttgttttacttggcgtgagttttctgacttcattcgagtgaag
ttaatttctggacccccagctaaacttcttcttatagactggccagaattaaaggagtcc
attccagttattaatggaaaagaattacagaaccctcttattgttcaactttgtgatcag
tgggataatccagcacccgtaccacaggttaaaataagtcttataaaagctaacaactta
aagctcactccttcaaaccaacagcataaaacagatgaaaagggcagggctaatttggga
gtattcagtgtttctgccccaaggggagaacatattatacagattaaagccatccataac
aagaataccattgaaggacctgtaatcaagttaatgattcttccagaccctgaaaaaccc
attcgtctcaatgttaaatatgacaaagatgcttcctttttagcagggggacttttcact
gattttatgattagtgttatttctgaagatgacagtgtcattaaaaatattaatccagca
cgtatttccatgaaaatgtggaagctgcctagccctgggaaccggccaccagcaaatgca
gaaacatttagttgtaataaaataaaagacaatgacaaggaagatggctgcttctatttc
agggataaagtaattcctcacaaagtgggaacgtattgtatccagtttggttttatgatg
gataaagcatatactctcagtagtgaacaggtgatagttgatgttcttcctaaccaacct
gtgaagttagttcctgaaatccaaccagctacaccagctgtttctaatgttcgctcagtt
gtcagtaggaccttggtcagagatttacatctcaatatcacggacgaatacagcaatcat
actggaattgatttggttggcacagtaatagctactattaaaggttccagtgaggaggat
acagatgtaccactttttatcgggaaagttaaaacacttgaatttccctttgtgaatggt
tcggctgaaatcacgagcctagtgctggcagaaaatagtcctggaagggatagcactgaa
tattttattatatttgagcctcagctaccagctttatcaagaacattagaaccatatatc
ctacaatttatgttttacaatgatgttaagaagcaacaacaaatggcagcacttacaaaa
gagaaggaccaattatctaagtctattattatgtacagaagtttatttgaagccagcaaa
cagcttcttgatgaaatgaagtgccaagttgaagaagcaaaattaaaagaggctcaactg
cggaatgaactaaaagcacataatattgacattcctgcaacacagcagatgacacatatt
gaagcacttttgaaaagaaaggtaacagaacaggaagagctaaagaaaaaacctagaaga
tcgtgtactcttccaaattataccaaaggcagtgcagatgttttgggaaagattgcacac
ttagcgcaaattgaagatgatagagctgcaatggttatttcttggcatctggcaagtgac
atggactgtgtggtcaccctgaccactgatgctgcgcgtcgcatctatgatgaaacccag
ggccgtcagcaggtgttgccccttgactctatttataagaagacgcttccagattggaaa
aggcctctgcctcatttacgaaatggaaaattgtgttttaaacccattggagatccaatt
tttgcccgagacttgttaacatttccagacaataaagaacattgtgaaacagtgtttggt
atgctgttaggagacacaattattttggataatttggatgctgccaatcattatagaaga
gaggtttccagcttgcacatgttccagctttcgcgggttttacttgtctttggtttcttt
gcagatcttcttcaacaataccgctcggctgtgtgcaagctgggcagtgtgaataaggac
cttaatggacagttggagtaccttcacactcctgatatgaagaagaaaaagcaagaactc
gatgaacaagagaaaaatctgaaactaatagagcaaaaacttggtatgtgtttagttttt
gttaacatgtactttctctgtctggagataaatatttatgattag
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integrated database retrieval system
