Termitidicoccus mucosus: OH491_04860
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Entry
OH491_04860 CDS
T09991
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tmv
Termitidicoccus mucosus
Pathway
tmv03030
DNA replication
tmv03410
Base excision repair
tmv03420
Nucleotide excision repair
tmv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tmv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OH491_04860 (ligA)
03410 Base excision repair
OH491_04860 (ligA)
03420 Nucleotide excision repair
OH491_04860 (ligA)
03430 Mismatch repair
OH491_04860 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tmv03032
]
OH491_04860 (ligA)
03400 DNA repair and recombination proteins [BR:
tmv03400
]
OH491_04860 (ligA)
Enzymes [BR:
tmv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OH491_04860 (ligA)
DNA replication proteins [BR:
tmv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OH491_04860 (ligA)
DNA repair and recombination proteins [BR:
tmv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OH491_04860 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OH491_04860 (ligA)
MMR (mismatch excision repair)
DNA ligase
OH491_04860 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OH491_04860 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
BRCT_2
Zn_ribbon_NUD
End3
RNA_ligase
DUF72
Motif
Other DBs
NCBI-ProteinID:
XAE57554
LinkDB
All DBs
Position
1467043..1469106
Genome browser
AA seq
687 aa
AA seq
DB search
MTPDAAQSRLAELRATIARHDELYYRRAEPEISDSEYDRLKRELADLETRFPELAVAASA
LDGESPTARVGDDRTEGFATYRHRQRMMSLDNTYSPDELREFHERLAKLLDREELTYVVE
PKIDGLAVSVTYEHGKLVRAVTRGNGIEGDDITANALTIRALPRKLHPVPGGAPLPDIVE
IRGEIFMTLAEFERINKLREEAAEPLYANPRNLAAGTVKQLDSREVAQRRLEIVLYGLGY
CEPASALPATQSAWHELVRAWGLPAVEKYWIARGPDEVWAAVQELDRLRDAFSYATDGAV
VKLDSLPLQREAGATSKAPRWAMAYKFAAERAETLLRAITIQVGRTGVLTPVAELEPVHL
SGSTVSRATLHNRDELARKDIRVGDYVYVEKAGEIIPAVVAVNLSRRAPACVPYVFPAAC
PVCSTPVVQIEGEVALRCPNYDCPVQIRRRAQHFASKACVDIDGLGIAMVDTLVERGWLR
GIPDIYRLRREDLLTLGKSVEKSTDNLLAAIEASKAAELWRFIHGLGITHVGAASAKDLA
QKFRSLEALADARYEDFIADKKSVIEGIGETMALALIEHFNDPRNRAVITELAALGVSPA
PPPEKSTEPASLLLAGKTFVLTGTLPGMTRDEAAAKIEAAGGKVSGSVSKKTSYVLAGAE
AGSKLAKAESLGVPVIDEAAFLRMLAG
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgacacccgacgccgcccagtcccgcctcgccgaactccgcgccaccatcgcccgccac
gacgagctctattaccgtcgcgccgagcccgagatcagcgacagcgaatatgaccgcctc
aagcgcgaactcgccgacctcgagacccgctttccggaactcgccgtcgccgcctccgcg
ctcgacggagaatcccccaccgcgcgcgtcggcgacgaccgcaccgagggcttcgcgacc
taccgccaccgccagcgcatgatgagcctcgacaacacctattcgcccgacgagctccgc
gagtttcacgaacgcctcgccaagcttctcgatcgcgaggaactcacctacgtcgtcgag
ccgaaaatcgacggcctcgccgtcagcgtcacctacgaacacggcaagctcgtccgcgcc
gtcacccgcggcaacggcatcgagggcgacgacatcaccgccaacgctctcaccatccgc
gcgcttccgcgcaagctgcaccccgttcccggcggcgctccgctgccggacatcgtggaa
atccggggcgagattttcatgacgctcgccgagtttgagcgcatcaacaaactccgcgaa
gaagccgccgagccgctctacgccaatccccggaatctcgccgccggcacggtcaagcag
ctcgattcgcgcgaggtcgcgcagcgccgtctcgaaatcgtcctttacggtctcggctat
tgcgagcccgcctccgcgctgcccgccacccaatccgcatggcacgaactcgtccgcgcc
tgggggctgcccgcggtcgaaaaatactggatcgcgcgcggccccgatgaagtgtgggcc
gccgtgcaggaactcgaccggctccgcgacgccttctcctacgccaccgacggcgcggtc
gtaaaactcgattcattgccgctccagcgcgaggccggcgcgacctcgaaggccccgcgc
tgggccatggcctacaaattcgccgccgagcgcgccgagacgctcctgcgcgccatcacc
atccaggtcggccgcaccggcgtcctcacgccggtcgccgaactggagccggtgcacctt
tccggctccaccgtgtcccgcgccacgctgcacaaccgcgatgaactcgcccgcaaggac
atccgcgtcggcgattacgtttacgtcgagaaggccggcgaaatcatcccggccgtcgtc
gcggtgaacctctcccggcgcgcgcccgcctgcgtgccctacgtctttcccgccgcatgc
ccggtctgctcgacccccgtcgtgcaaatcgagggcgaggtcgcgcttcgctgccccaat
tacgactgtcccgtgcaaatccgccgccgcgcgcagcatttcgcctccaaggcctgcgtg
gacatcgacggcctcggtatcgccatggtggatacgctcgtcgagcgcggctggctgcgc
ggcatacccgacatctaccgcctccgccgcgaggaccttctcaccctcggcaaaagcgtg
gagaaatccaccgacaacctcctcgccgccatcgaggcgagcaaggccgccgagctctgg
cgcttcatccacggccttggcatcacgcatgtcggcgcggcgtcggccaaggacctcgcg
cagaaattccgctccctcgaggcgctcgccgacgccagatacgaggacttcattgccgac
aagaaatccgtcatcgaaggcatcggcgagacgatggcgctcgccctcatcgagcatttc
aacgatccgcgcaaccgcgctgtcatcaccgaactcgccgcgctcggcgtcagcccggcg
ccgccccccgagaaatcgaccgagcccgcgagcctgcttctggccgggaaaaccttcgtc
ctcaccggcacgcttccgggcatgacgcgtgacgaggccgcggccaaaatcgaagccgcc
ggcggcaaagtcagcggcagcgtgagcaagaaaaccagctacgtccttgcgggcgcggaa
gccggctctaaactggccaaggccgaatcgctcggcgtgcccgtcatcgacgaggccgcg
ttcctgcgcatgctcgcaggatag
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