Thermotoga maritima MSB8: THMA_0096
Help
Entry
THMA_0096 CDS
T03902
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tmw
Thermotoga maritima MSB8
Pathway
tmw03030
DNA replication
tmw03410
Base excision repair
tmw03420
Nucleotide excision repair
tmw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tmw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
THMA_0096 (ligA)
03410 Base excision repair
THMA_0096 (ligA)
03420 Nucleotide excision repair
THMA_0096 (ligA)
03430 Mismatch repair
THMA_0096 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tmw03032
]
THMA_0096 (ligA)
03400 DNA repair and recombination proteins [BR:
tmw03400
]
THMA_0096 (ligA)
Enzymes [BR:
tmw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
THMA_0096 (ligA)
DNA replication proteins [BR:
tmw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
THMA_0096 (ligA)
DNA repair and recombination proteins [BR:
tmw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
THMA_0096 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
THMA_0096 (ligA)
MMR (mismatch excision repair)
DNA ligase
THMA_0096 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
THMA_0096 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
HHH_8
HHH_3
5_3_exonuc
RNA_ligase
BRCT_2
RUBY_RBDX
UPF0758_N
UBA_3
Motif
Other DBs
NCBI-ProteinID:
AKE27907
UniProt:
Q9WXV5
LinkDB
All DBs
Position
complement(103127..105193)
Genome browser
AA seq
688 aa
AA seq
DB search
MSERKIPKEVIEEVERLREEIEYHNYRYYVLNDPVITDEEYDRLMRRLIELERMYPELVT
PDSPTQRVGGKVLEGFKTVKHSVPMLSLDNTYNEEEILEFDRRVKKALQEAEVEYVAELK
IDGVSIALRYENGRFVLGATRGDGIEGEDVSENVKTVRSIPLRLRKPVTIEVRGEIYMPV
DEFKRLNDEREEEGLPPFANPRNAAAGTLRQLNTALVAARRLDSFIYYVVHPENYGLKTQ
WEALQFLKELGFKVNPHSRLCKNIQEVIDYWKEWKERKRELDYWVDGVVVKVNRFDFQRI
LGETSKAPRWAIAFKFPAEQARTRVLDVTIQVGRTGVLTPVAELEPVQLAGTIVKRASLH
NFEYIREKDIRIGDYVFVEKAGGIIPQIVKSIPELRTGNEKEIKPPDKCPVCGGKVGKLN
PDEVAIRCLNPHCPAKLKRALRTLVSREALDIEGLGEKLIDRLVDAGLIKDIADIFYLTP
FDLAQLGPGIGQRTIAKILQEIEEAKKRPLHKLITGLGIPMVGQKTAKILAEHFKSLEAI
ADASYETLKDIPGIGPEIAKSIVEYFRNPKTREIIEKLKKAGVKLEEKVVKLDILRGLTF
AVTGTLKNFTREEIIEFLEKLGAKVVNSVSRNTDYLIVGENPGSKYERAKMLKVKMMSEE
EFLEFVRKRAELKGYNFDEIMRSWKEWS
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagagaaagatcccaaaggaagtaattgaagaagtggaaaggctcagagaggag
atcgagtatcacaactacagatactacgttttgaacgatccagttattacggacgaagag
tacgatagactcatgagaaggctcattgaactggaaaggatgtatccagaactggttaca
ccggattcgccaactcagagggtagggggaaaggtactcgaaggttttaaaacggtaaag
cattccgttcctatgttgagtctggataacacgtacaacgaagaagagattctcgaattc
gatcggcgtgttaaaaaagctcttcaggaggcagaagtcgagtacgttgccgagctgaag
atagacggcgtttccatagctcttagatatgagaacggaaggttcgttctgggagcgaca
cgaggagatggaatagaaggagaagacgtctccgagaatgtgaaaaccgtacgcagtatt
ccacttcgtctgagaaagcccgtcaccatagaagtgagaggggaaatatacatgcctgtg
gatgaattcaaaagattgaacgatgaaagagaagaagaaggacttcctccctttgccaac
ccaaggaatgccgctgcaggaacgcttcggcagttgaacacggctcttgttgcggcaagg
cgtctggattcgttcatttactatgtggttcatcctgaaaactacggtctgaaaacacaa
tgggaagctcttcagtttctgaaagaactcggtttcaaggtgaatccacactccagactg
tgcaaaaacattcaggaagtgatcgattactggaaggaatggaaagaaagaaaaagggag
ctggattattgggttgatggcgttgtggtgaaggtgaacagattcgatttccagagaatt
ctcggtgagacatcgaaagcaccacgatgggctatcgcgttcaagtttcctgctgagcag
gcaagaactagggtgctggatgtcaccatccaggttggaagaacaggtgttctcacaccc
gttgccgagctcgaacccgttcagctcgctggaacgatcgtgaagagagcttcactgcac
aatttcgagtacataagagaaaaagatatcagaataggagactacgtctttgtggaaaaa
gccggtggaatcattcctcagatagtcaaatcgataccagaattgagaactggcaacgaa
aaggaaataaaaccacccgataagtgccctgtctgtggtgggaaagtaggaaagttgaat
cccgacgaggttgctatcaggtgtctaaacccgcattgtcctgctaaactgaagagagct
ttgaggactctggtttccagagaggctctcgatattgaaggactcggggagaagctgata
gacagactagtcgatgctggtctcataaaggatatagcagatatcttctaccttactcct
ttcgatctcgctcagcttggaccggggatcggtcagcgaacgatagcgaagattctccaa
gagatagaagaggcgaagaagagaccgcttcacaaactgataacgggtcttggaattccc
atggtaggtcagaagacggcaaagattctcgcggagcatttcaaatccctggaagcaatt
gcagatgcttcttatgaaacactaaaggacataccgggaatcggtccagaaatcgcaaag
agcatcgttgagtacttccgaaatccaaaaacaagggaaatcattgaaaaactcaaaaaa
gccggagtgaagctcgaagagaaagttgtgaaactcgatatcctgaggggattgactttc
gccgtgacaggtaccttgaagaactttacaagggaagaaataatagagttcctcgagaag
ctgggagcaaaagtcgtcaactctgtgagcaggaacacggattatctcatagtgggtgaa
aatcccggctccaagtacgaaagagcgaagatgttgaaagtaaaaatgatgagtgaggaa
gaattcctcgagtttgtcagaaaaagagcagaattgaagggatacaacttcgacgagata
atgaggagttggaaggaatggagttga
DBGET
integrated database retrieval system
