Terrisporobacter mayombei: TEMA_32840
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Entry
TEMA_32840 CDS
T09390
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tmy
Terrisporobacter mayombei
Pathway
tmy03030
DNA replication
tmy03410
Base excision repair
tmy03420
Nucleotide excision repair
tmy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TEMA_32840 (ligA)
03410 Base excision repair
TEMA_32840 (ligA)
03420 Nucleotide excision repair
TEMA_32840 (ligA)
03430 Mismatch repair
TEMA_32840 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tmy03032
]
TEMA_32840 (ligA)
03400 DNA repair and recombination proteins [BR:
tmy03400
]
TEMA_32840 (ligA)
Enzymes [BR:
tmy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TEMA_32840 (ligA)
DNA replication proteins [BR:
tmy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TEMA_32840 (ligA)
DNA repair and recombination proteins [BR:
tmy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TEMA_32840 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TEMA_32840 (ligA)
MMR (mismatch excision repair)
DNA ligase
TEMA_32840 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TEMA_32840 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
Nlig-Ia
Mustang
RNA_ligase
DUF4796_N
RUBY_RBDX
Zn_ribbon_NUD
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
WMT82792
LinkDB
All DBs
Position
3161798..3163819
Genome browser
AA seq
673 aa
AA seq
DB search
MDVERRISELIDLINYHNEKYYNEDTPEIEDFEYDNLMKELIKLEEENPMLKRVDSPSNR
VGGKALDKFDQIVHKYPMLSLSNAYSAQDLRDFDRRVREAVSGNVEYVIEFKIDGLSVSL
TYENGEFVKGATRGDGIVGEDITKNLMTVKSIPLKVDYKDELIVRGEVYISKGNFEKINK
QQEESDQPLYANPRNLAAGSLRQLDPKLTAKRPLDIFIFNLEHLANDDCKTHSGSLELLD
KLGFSVSPDFKVFHNIEDIIKYIEYWTEHREELKYGIDGMVIKVNNFEQREQMGFTAKSP
RWAIAYKFPAERKTTKLLDIIIEVGRTGNITPTAVLEPVRLAGTTVSRATLHNEDNIKEK
DIRIGDMVVVQKAGDIIPQVVEVDKKARTGEEVVFEMPHKCPVCGEPTVRLDGEAAVKCI
NMSCPAQIRRGIIHFVSRDAMNIDGLGESIITLLLEQNLIKDVSDLYYLKKEDVVNLERM
GQKSATNLINALEKSKTNDLYRLINGLGIKHIGVKGAKIIANEFKDLDVIMNLNSNQLVN
LEEFGETMADSVVEFFKEEKNISVIEKLKNAGVNTKIIDNDNEDIIKVFDKMKIGLTGTL
PTLKRNDAKDIIEKLGGKSTSSVSKSTSFVLAGEEAGSKLTKANELGVKVIDEEFFLNLS
KLSSKEEVLERLK
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggatgtagaaagaagaatatctgaacttattgatttaataaattaccacaatgaaaaa
tattataacgaagatacaccagagatagaggattttgaatatgataatttaatgaaagaa
ttaattaagttagaagaggaaaatccaatgctaaagagggttgattctccatcaaataga
gtaggagggaaagctctagataaatttgatcaaatagtacataaatatcctatgttaagc
ttatcaaatgcatactcagcacaagacttaagggactttgacagaagagttagagaagct
gtgtcaggaaacgtagaatatgttatagagtttaaaatagatggattatcagtaagtctt
acttatgaaaatggagagtttgtaaagggtgctactagaggcgatggtatagtaggagaa
gatataactaaaaatttaatgacagtaaaatcgatacctttaaaagtagattacaaagat
gaattaatagtaagaggagaggtttatatttcaaaaggtaattttgaaaaaataaataaa
caacaagaggaatctgatcaacctttatatgctaatccaagaaacttagctgctggttct
ctaagacaattagatcctaaattaacagctaaaagacctcttgatatatttatattcaat
ctagaacatttagctaatgatgattgtaaaactcatagtggttctcttgagttactagac
aaattaggattctctgtaagtccagactttaaagtatttcataatattgaagatatcata
aaatatatagaatactggacagagcatagagaagaactaaagtatggaatagatggaatg
gttattaaagttaataactttgaacaaagagaacaaatgggattcacagcgaaaagccca
agatgggcaattgcttataaatttccagcagaaagaaagacaacaaagttattggatata
attatagaagttggaagaacaggaaatataacaccaacagctgttttagaaccagttaga
ttagcaggaacgacagtaagtagagcaacacttcataacgaagacaatataaaagaaaaa
gatataagaatcggtgacatggttgtggttcaaaaagctggagatataatacctcaagtc
gtggaagttgataaaaaagctagaacaggcgaagaagtagtttttgaaatgcctcataaa
tgtcccgtttgcggagagccaactgtaagattagatggagaagcagcagtaaaatgcata
aatatgtcttgtcctgctcaaattagaagaggtattattcactttgtctctagagatgct
atgaatatagacggcctaggtgagtcaataataacattactattagaacaaaatcttata
aaagatgtttctgatttatattatcttaaaaaagaagacgtagtaaatttagaaagaatg
ggacaaaaatcagcaacaaaccttataaatgctctagaaaagtctaagacaaatgactta
tacagattaataaatggactaggaataaaacatataggtgttaaaggtgcaaaaattatt
gccaatgaatttaaagacttagatgtaataatgaatttaaattcaaatcaacttgttaat
ttagaagagtttggtgaaactatggcagatagtgtagttgaattcttcaaagaagaaaaa
aatatttctgtaatagaaaaattaaaaaatgcaggtgtaaatactaaaataattgacaat
gataatgaagatattataaaagtattcgataaaatgaaaattggattaacaggaacgcta
ccaactcttaagagaaacgatgcaaaagacataatagaaaagttaggtggaaaatcaact
tcaagtgttagcaagtcaacatcctttgtacttgcaggagaagaagctggttcaaaactt
acaaaagcaaatgaactaggagttaaggtaatagatgaagaattcttccttaatttatct
aaattatcctctaaggaagaagttttggaaagattaaaataa
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