Thioalkalivibrio nitratireducens: TVNIR_1421 Help Entry TVNIR_1421        CDS       T02408                                  Symbol ligA_[H] Name (GenBank) DNA ligase   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism tni  Thioalkalivibrio nitratireducens Pathway tni03030   DNA replication tni03410   Base excision repair tni03420   Nucleotide excision repair tni03430   Mismatch repair Brite KEGG Orthology (KO) [BR:tni00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     TVNIR_1421 (ligA_[H])    03410 Base excision repair     TVNIR_1421 (ligA_[H])    03420 Nucleotide excision repair     TVNIR_1421 (ligA_[H])    03430 Mismatch repair     TVNIR_1421 (ligA_[H])  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:tni03032]     TVNIR_1421 (ligA_[H])    03400 DNA repair and recombination proteins [BR:tni03400]     TVNIR_1421 (ligA_[H]) Enzymes [BR:tni01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      TVNIR_1421 (ligA_[H]) DNA replication proteins [BR:tni03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      TVNIR_1421 (ligA_[H]) DNA repair and recombination proteins [BR:tni03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      TVNIR_1421 (ligA_[H])    NER (nucleotide excision repair)     GGR (global genome repair) factors      TVNIR_1421 (ligA_[H])    MMR (mismatch excision repair)     DNA ligase      TVNIR_1421 (ligA_[H])   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       TVNIR_1421 (ligA_[H]) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD Nlig-Ia HHH PTCB-BRCT PP2C_2 Motif Other DBs NCBI-ProteinID:  AGA33091 UniProt:  L0DXK1 LinkDB All DBs Position 1397449..1399470 Genome browser AA seq 673 aa AA seqDB search MSPSGDAAAARRAAELRERIAHHDWRYYVLDDPEISDAEYDALLAELQRIEAEHPELVVP ESPTQRVGGAPASGFAPVRHRLPMLSLNNGFSEDEIRSFDRRVRERLEADAAVVYMAEPK LDGLAVSLLYRDGRLVQAATRGDGETGEDVTGNVRTVRSIPLALSGSGWPRELEVRGEVF MRHRDFEHLNRHLQEAGERGFMNPRNAAAGSLRQLDPAVTARRPLTFFAYGPGSVGDHPL PETQSGVLDWFESLGIPVCPERARVSGVDGALTYYRAMAERRAELPYDIDGVVFKLDARE AQQRIGFVARAPRWAIAYKFPAEERTTRLVAVDFQVGRTGALTPVARLEPVLVGGVMVSN ATLHNMDEIARKDVRIGGRVVVRRAGDVIPEVVGRAGGEREPQTRTIELPAACPECGSRV EQEDGKAVARCTGGLVCPAQRREALRHFVSRKALDIEGFGERLIEQLVASGTVTNPAELF ALDAGRLEGFDRIGPKSAQNLERALQRARETTLARFVYALGIREIGEVTARALAAHFGAL DPLMEASVEELEAIRDVGPVVARHVASFFAEPHNREVIAALRNAGVHWPEPEPADTDARP LEGRTYVLTGSLEGMTREQASQRLQALGAKVTGNVSRQTTAVIAGASPGSKLARAEALGV PVLDEAGLLELIG NT seq 2022 nt NT seq  +upstreamnt  +downstreamnt gtgagtccctccggggacgccgcggccgcccgccgcgccgcggaactgcgcgaacggatc gcccatcacgactggcgctattacgtgctggacgacccggagatcagcgacgccgagtac gacgcgctgctcgcggagctccagaggatcgaggcggagcatccggagctggtggtgccg gagtcgccgacccagcgggtcggtggtgcgcctgccagcggtttcgccccagtgcggcat cggctgccgatgctgtcgctaaacaacggcttttccgaggacgagatccgatcgttcgac cggcgcgtgcgcgagcgcctggaggccgatgccgcggtggtctacatggccgagccgaag ctcgacgggctggcggtcagcctgctgtaccgcgacgggcgactggtgcaggcggccacg cgcggcgatggcgagaccggcgaggacgtgaccgggaacgtgcgcaccgtgcgctcgatt ccgctggcgctgtcgggttcggggtggccgcgggaactcgaagtgcgcggcgaggtgttc atgcggcaccgggatttcgagcacctgaaccggcatttgcaggaggccggcgagcgcggg ttcatgaatccgcgcaatgcagccgccggcagcctccgccagctcgatcccgcggtcacc gcgcgccggccgctgacctttttcgcctatggcccgggttcggtcggcgatcatccgctc ccggagacgcagtcaggtgtactggactggttcgagtcgctaggtatcccggtgtgcccc gagcgggcacgggtctctggggtcgacggtgcgttgacgtactaccgggcgatggcggaa cgccgggcggaactcccctatgacatcgacggcgtggtgttcaagcttgatgcgcgggag gcacagcagcggatcggcttcgtggcccgcgcgccgcgctgggcgatcgcctacaagttt ccggccgaggagcgcaccacccggctggttgcggtggacttccaggtcgggcgcaccggg gccctgaccccggtggcgcggctggagccggtactggtcggcggggtgatggtcagcaat gccacgttgcacaacatggacgagatcgcccgcaaggacgtccgtatcggcggccgcgtg gtggtgcgccgggcgggtgacgtgattcccgaggtggtcgggcgagccgggggtgaacgc gagccgcagacccgaacgatcgaactgccagccgcctgccccgagtgcggctcgcgggtg gaacaggaagacggtaaggcggtggcgcgttgcaccggcggtctggtctgcccggcccag cggcgcgaggcgctgcggcatttcgtgtcacgaaaggcgctggacatcgaggggttcggt gaacggctgatcgagcaactggttgcgtcgggcacggtgaccaacccggccgagctgttc gcgctcgatgccgggcggctcgagggcttcgaccgcatcgggccgaaatcggcgcagaac ctcgagcgggcgctgcagcgggcccgggagacgacgctggcccggttcgtctacgctctc gggatccgcgagatcggcgaggtgaccgcgcgtgcgctggccgcgcatttcggtgcgctg gatccgctgatggaagcctcggtggaggaactggaagccatccgcgatgtgggccctgtg gtcgcgcggcacgtcgcgagcttttttgcagagcctcacaaccgcgaggtgatcgccgcc ctgcgcaatgccggcgtgcactggcccgagccggaacccgcggacacggacgcacggccg ctcgagggtcgcacctacgtgttgaccggcagcctcgagggcatgacgcgcgagcaggcc agccagcgcctgcaggcgctgggcgcgaaggtgaccggcaatgtctcgcggcagacgacc gcggtgatcgccggtgccagcccgggatccaagctggcgcgtgccgaagccctgggcgtc ccggtgctcgacgaggcggggcttctggaactgatcggttga

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