Trichoplusia ni (cabbage looper): 113494621
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Entry
113494621 CDS
T05757
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113494621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tnl03041
]
113494621
Spliceosome [BR:
tnl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
113494621
Complex C
U5 SnRNP specific factors
113494621
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Ras
Motif
Other DBs
NCBI-GeneID:
113494621
NCBI-ProteinID:
XP_026728853
UniProt:
A0A7E5VKK1
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Position
5:14171910..14181036
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AA seq
987 aa
AA seq
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MDGDLYDEFGNYIGPDLESDSDDEQSVYGQDNRDADEDAMDDDEDADAEPEAAPMSVVLH
EDKRYYPQAVEVYGPDVETVVQEEDTQALDKPLVEPIKHKKFQVQEQQLPETRYDMEYMA
DMLDNTNLMRNITLMGHLHNGKTSFVDCLIRQTHPSTINTDTTIPMRYTDTLFVEQERGV
SIKSMPVTLLLKNIKGKSHLLNIMDTPGHVNFSDEVTAALRISDGAVLFVDAAEGIMLNT
ERLLRHAVQERVPLTLCINKIDRLILELKLPPADAYYKLRHIIDELNSMLETNQPQDNPD
EPATVFSPLLGNVCFASSLYDVCFSVESFAAMYASAHPGSGLRAPDMAAWLWGDVYFNAK
TRRFTKKQPHASAQRSFVEFILEPLYKIFAQVVGDVDDTLPAVLMELGIKLTKQEAKLNV
RPLLRLVCSRFFGDFCGFVEMVVSHVPSPLDAAPRKVAHTFRGAGEGAGAGAGGAGPGLL
QDMLTCDQSGRLVAHTTKMYPTDDCTFFLVLARIMSGTLYAGQTVRVLGENYSTQDEEDS
RIMNVGRLWIYEARYKVELNRVPAGCWALIEGIDQPIVKTCTVVSADEDAELHTFTPLRF
NTQAVVKIAVEPVNPSELPKMLDGLRKVNKSYPLLSTRVEESGEHVILGTGELYLDCVMH
DLRNMYSEIDIKVADPVVSFCETVVETSSLKCFAETPNKRNKLTMIAEPLERGLAEDIEA
GAVCVNWDRKRLGEFFQTKYDWDLLAARSIWAFGPDSTGPNILVDDTLPSEVDKHLLASV
KDSIVQGFQWGTREGPLCEEPIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVAYSAFLM
ATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFVPAIDSFG
FETDLRTHTQGQAFCLQVFHHWQIVPGDPLDKSIVIRPLEPQPATHLAREFMIKTRRRKG
LSEDVSINKFFDDPMLLELARQDVQLN
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggacggtgatttgtacgatgagtttggtaattacattgggccggacctcgagtcggac
tctgatgacgagcagagtgtttatggacaggacaaccgggacgccgacgaagatgcaatg
gatgatgatgaggacgccgatgcggagcccgaggcggcgcccatgtccgtcgtgcttcac
gaagataaacgatactatccacaagcagtagaagtgtatgggccagatgtggagactgtg
gtgcaggaggaagacacgcaggccctggacaagcctctggtggagcccatcaagcacaag
aagtttcaggtgcaggagcagcagctgccagagacgaggtacgacatggagtacatggcg
gacatgctggacaataccaacctcatgaggaacatcactcttatgggacacttacataat
ggcaaaacatcttttgtagactgtttaatcagacagacacatcctagcacaataaacaca
gataccacaataccaatgcggtatactgacacactgtttgtggaacaagaacgtggagtt
tccatcaaatccatgccagtcacactactactcaaaaatataaaggggaagtcacatctc
ctgaacatcatggacactcctggtcatgtgaacttcagtgatgaagttactgcggcattg
aggatttcagatggtgctgtcctcttcgtagacgcggctgaaggtataatgctaaacacg
gagcgcctcctccgccacgcggtacaggaacgagttcctctgacgctctgcatcaacaag
atcgacagactgatcttggaactgaagctgccccccgcagacgcgtattacaagctcagg
cacattatagatgagctaaactctatgctggagacaaaccagccgcaagacaatcccgat
gaacctgcaactgtgttctcgccacttttaggcaacgtgtgcttcgcgtcgtcgctgtac
gacgtgtgcttcagcgtggagtcgttcgcggcgatgtacgcgagcgcgcacccgggctcg
gggctgcgcgcgcccgacatggcggcgtggctgtggggcgacgtctacttcaacgccaag
acccgccgcttcaccaagaaacagccacacgcctccgcacaaaggagctttgtcgagttc
attttggagcccctttataagatttttgctcaggtggtaggtgacgtggacgacacgtta
cccgcagtgctgatggagctaggcatcaagttgaccaagcaggaagccaagctgaacgtg
cgccccttgctcaggcttgtctgcagccggttctttggggatttctgtggtttcgtggag
atggtggtctctcacgtgccgtccccgctggacgcggcgccgcgcaaggtagcgcacacg
ttccggggcgcgggagagggcgcgggggcgggcgcggggggcgcgggcccgggcctgctg
caggacatgctcacctgcgaccagtccggacgcctcgtcgcgcacaccaccaagatgtac
cccaccgacgactgcaccttcttcttggtactagcgcgaataatgtcgggcacgctgtac
gcggggcagacagtgcgcgttctgggagagaactacagcacgcaggacgaggaggactcg
cggatcatgaacgtgggccggctgtggatatacgaggccagatataaggtggagttgaac
cgcgtcccggctggctgctgggcgctgatcgagggcatcgaccagcccatcgtgaagacc
tgcaccgtcgtgtcggccgacgaggacgccgagctgcacaccttcacgccgctgcggttc
aacacgcaggccgtcgtcaagattgctgtcgaacccgtcaatccatcagaactgccgaaa
atgttggacggattgaggaaggtgaacaaatcgtacccgctgctgtcgacgcgcgtggag
gagtccggcgagcacgtgatcctgggcacgggagagctgtacctggactgcgtcatgcac
gacctcaggaacatgtactccgagatagatattaaagtggcggaccccgtggtatcgttc
tgcgagacagtggtggagacgtcgtcgctgaagtgtttcgcggagaccccgaacaagcgc
aacaagctgacgatgatcgcggagccgctggagcgaggcctggccgaggacatcgaggcc
ggggccgtctgcgtcaactgggacaggaagcggctcggggagttcttccagaccaagtac
gactgggacttgttggcggcgcgttcgatctgggcgttcggtcccgactccaccgggccc
aacatcctggtggacgacactctgccctccgaggtcgacaagcatctgctggcctcagtc
aaagatagtatagtacaaggtttccaatggggtacgcgagagggccctctctgcgaggag
ccgatccggaacgtaaagttcaagatcctggatgccgtcatcgcgcaggaaccgctgcac
cgcggtggaggacagatcatacctactgctaggagggtcgcgtactcagcgttcttgatg
gccacaccccgcctcatggagccctacctgttcgtggaggtccaggcgccggccgactgc
gtgtccgccgtctacaccgtactggccaagcggagaggtcacgtgactcaagacgcgcct
gtgccgggctcgcccctgtacacgatcaaggcgttcgttccggcgatagactcgtttggc
ttcgagaccgacttgcgcacgcatacgcagggccaggcattctgcctgcaggtcttccat
cactggcagatcgtgccgggtgatcccctcgacaagagcattgttataaggccgctggag
ccccagcccgccactcacttagctcgagagtttatgatcaaaacgcgtcggcgcaaaggc
ctcagtgaagacgtatccatcaacaagttcttcgacgaccctatgttgttggagctggct
cggcaggatgttcagttgaattaa
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