Thermotoga petrophila RKU-10: Tnap_0730
Help
Entry
Tnap_0730 CDS
T01139
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tnp
Thermotoga petrophila RKU-10
Pathway
tnp03030
DNA replication
tnp03410
Base excision repair
tnp03420
Nucleotide excision repair
tnp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Tnap_0730
03410 Base excision repair
Tnap_0730
03420 Nucleotide excision repair
Tnap_0730
03430 Mismatch repair
Tnap_0730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tnp03032
]
Tnap_0730
03400 DNA repair and recombination proteins [BR:
tnp03400
]
Tnap_0730
Enzymes [BR:
tnp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Tnap_0730
DNA replication proteins [BR:
tnp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Tnap_0730
DNA repair and recombination proteins [BR:
tnp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Tnap_0730
NER (nucleotide excision repair)
GGR (global genome repair) factors
Tnap_0730
MMR (mismatch excision repair)
DNA ligase
Tnap_0730
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Tnap_0730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
HHH_8
5_3_exonuc
HHH_3
RNA_ligase
BRCT_2
RUBY_RBDX
UPF0758_N
UBA_3
Motif
Other DBs
NCBI-ProteinID:
ADA66825
UniProt:
D2C789
LinkDB
All DBs
Position
complement(754828..756894)
Genome browser
AA seq
688 aa
AA seq
DB search
MSERKIPKEVIEEVERLREEIEYHNYRYYVLNDPVITDEEYDKLMRRLIELERMYPELVT
PDSPTQRVGGKVLEGFKTVKHSVPMLSLDNTYNEEEILEFDRRVKKTLQEAEVEYVAELK
IDGVSIALRYENGKFVLGATRGDGIEGEDVSENVKTVRSIPLRLRKLVTVEVRGEIYMPV
DEFKRLNDEREEEGLPPFANPRNAAAGTLRQLNTALVAARRLDSFIYYVVHPENYGLKTQ
WEALQFLKELGFKVNPHSKLCKNIQEVIDYWREWKERKKELDYWVDGVVVKVNRFDFQRI
LGETSKAPRWAIAFKFPAEQARTRVLDVTIQVGRTGVLTPVAELEPVQLAGTIVKRASLH
NFEYIREKDIRIGDYVFVEKAGGIIPQIVKSIPELRTGSEKEIKPPDKCPVCGGKVGKLD
PEEVALRCLNPHCPAKLKRALRTLVSREALDIEGLGEKLIDRLVDAGLVKDIADIFYLTP
FDLAQLGPGIGQRTIAKILQEIEEAKKRPLHKLITGLGIPMVGQKTAKILAEHFKSLEAI
ADASYETLKDIPGIGPEIAKSIVEYFRNPKTREIIEKLKKAGVKLEERVMKLDILKGLTF
AVTGTLKNFTREEIVEFFEKLGAKVVNSVSRNTDYLIVGENPGSKYEKAKMLKVKTMSEE
EFLEFVRKRAELKGYNFDEIMRSWKEWS
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagagaaagatcccaaaggaagtaattgaagaagtggaaaggctcagagaggag
atcgagtatcacaactacagatactacgttttgaacgatccagttattacggacgaggaa
tatgacaaactcatgagaaggctcattgaactggaaaggatgtatccagaactggttaca
ccggattcgccaactcagagggtagggggaaaggtactcgaaggttttaaaacggtaaag
cattccgttcctatgttgagtctggataacacgtacaacgaagaagagattctcgaattc
gatcggcgtgttaaaaaaactcttcaggaggcagaagtcgagtacgttgccgagctgaag
atagacggcgtttccatagctctcagatatgagaacggaaagttcgtcttgggagcgaca
cggggagatgggatagaaggagaggatgtctctgagaatgtgaagaccgtacgcagtatt
ccacttcgtctgagaaagctcgtcaccgtagaagtgagaggggaaatatacatgcctgtg
gatgaattcaaaaggttgaacgatgaaagagaagaagaaggactacctccttttgccaat
ccgaggaatgccgctgcaggaacgcttcggcagttgaacacggcactcgttgcggcaagg
cgtctggattcgttcatctactatgtggttcatcccgaaaactacggtttgaagacacaa
tgggaagctctccagtttctgaaagaactcggtttcaaggtgaatccacactctaaactg
tgtaaaaacattcaggaagtgatcgattactggagggaatggaaagaaagaaagaaggag
ctggattattgggttgatggcgttgtggtgaaggtgaacagattcgatttccagagaatt
ctcggcgaaacatcgaaagcaccgcgatgggctatcgcattcaaatttcccgctgagcag
gcaagaaccagggtgctggatgtcaccatccaggttggacgaacaggtgttctcacaccc
gttgccgagctcgaacccgttcagctcgctggaacgattgtgaagagagcttcgctgcac
aatttcgagtacataagagaaaaagatatcaggataggagactatgtctttgtggaaaaa
gccggtggaatcattcctcaaatagtcaaatcgataccggaattgagaaccggaagcgaa
aaggaaataaaaccacccgataagtgtcctgtctgcggcgggaaagtaggaaagttggat
cccgaagaggttgctctcaggtgtctaaacccgcattgtcctgccaaactgaagagggct
ttgaggactctggtttccagagaggctctcgatattgaaggactcggggagaagttgata
gacagattggtcgatgctggccttgtaaaggatatagcggatatcttctacctcactcct
ttcgatctcgctcagcttggaccggggatcggtcagcgaacgatagctaagattctccaa
gagatagaagaggcgaagaagaggccgctccataaactgataacgggtcttggaattccc
atggtaggtcagaagacggcgaaaatcctcgcggaacatttcaaatccctggaagcaatc
gcagatgcttcttatgaaacactgaaggacataccgggaatcggtccagaaatcgcaaag
agcatcgttgagtacttccgaaatccaaaaacaagggaaatcattgaaaaactcaaaaaa
gctggagtgaaactcgaagagagagttatgaaactcgatattctgaagggattgactttc
gccgtgacaggtaccttgaagaactttacgagagaagaaatagtagagtttttcgagaag
ctgggagcgaaagtcgtcaactctgtgagcaggaacacggactatctcatagtgggtgaa
aatcccggttccaagtacgaaaaagcgaagatgttgaaagtaaaaacgatgagtgaggaa
gaattcctcgagtttgtcagaaaaagagcagaattgaaagggtacaacttcgatgagata
atgaggagttggaaggaatggagttga
DBGET
integrated database retrieval system
