Thermodesulfovibrio obliviosus: V4D31_09115
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Entry
V4D31_09115 CDS
T10572
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tob Thermodesulfovibrio obliviosus
Pathway
tob03030
DNA replication
tob03410
Base excision repair
tob03420
Nucleotide excision repair
tob03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V4D31_09115 (ligA)
03410 Base excision repair
V4D31_09115 (ligA)
03420 Nucleotide excision repair
V4D31_09115 (ligA)
03430 Mismatch repair
V4D31_09115 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tob03032
]
V4D31_09115 (ligA)
03400 DNA repair and recombination proteins [BR:
tob03400
]
V4D31_09115 (ligA)
Enzymes [BR:
tob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
V4D31_09115 (ligA)
DNA replication proteins [BR:
tob03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
V4D31_09115 (ligA)
DNA repair and recombination proteins [BR:
tob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
V4D31_09115 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V4D31_09115 (ligA)
MMR (mismatch excision repair)
DNA ligase
V4D31_09115 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
V4D31_09115 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
HHH_8
Zn_ribbon_NUD
RNA_pol_A_CTD
DUF3701
Motif
Other DBs
NCBI-ProteinID:
XCH48488
UniProt:
A0AAU8H498
LinkDB
All DBs
Position
1746736..1748742
Genome browser
AA seq
668 aa
AA seq
DB search
MKEIPEDVKKEIERLVKEINYHNYRYYVLDSPVISDEEYDMMLRRLKELEERWGYILPDS
PTQRVGAAPSEKFEKVEHREPMLSLDNAFSYEELRDFDERVKRLLGINESVEYTVEPKYD
GLAIELSYKNGLLYKASTRGDGYVGEDITQNIKTIKSIPLRIEGVTPEEIDIRGEVYMNI
DEFERINRERQEKGEPIFANPRNAASGSVRQFDPSITASRRLHIACYGVGYYRGVEFKTQ
YEFIQWLRQARFPVPAYVKVAKGIDEVIEAIKEIEKLRAGYPFETDGAVVKVNSFELQKR
LGAKTREPRWAIAYKYPAHQGITKLKDIVASVGRTGVITPVAILEPVRIGGVTVSRSTLH
NWDEVKRKDIRIGDYVIVERAGEVIPHIIGVVVDRRTGQEVIPKIPEHCPVCGSKTVREL
GEVALKCINFNCPAQVEERIKHFASRRAMNIEGLGDKTVELLHEKGLIKSFVDLYKLRQQ
DIKGLPGFADLSSKKLIEAIERSKKTTLARFLYALGISQVGEYAAKLLAQNFKKLEDLYH
VKMERLIEIPQIGEKTARAIEQFFNNEENLKAIEELKSLGLTIENPDYQKEKKPASLEGF
SFVITGTLPKPRHEVQEMIEKAGGRVSSSVSKNTDYLIVGEEPGSKLAKAKELGVKIISY
EELLKMLE
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagattccagaggatgtaaaaaaagaaattgaaaggcttgttaaagaaataaac
tatcacaactaccgttactatgttcttgatagtcctgttatatcagatgaagaatatgac
atgatgctacgtagactcaaagagcttgaagaaagatggggatatattttgcctgactca
ccgactcagagagttggagcagctccatctgaaaagtttgaaaaggttgaacaccgtgaa
cccatgctttcccttgataatgccttttcttatgaagaattaagagattttgatgagaga
gtaaaaaggcttcttggcattaatgagtctgttgagtatacagtagagccaaaatatgac
ggacttgcaatagagctttcctataaaaatggacttttgtacaaagcctccaccagagga
gatggatatgttggcgaggatataactcaaaacattaaaacaataaaatcaattcctcta
agaattgaaggagtcactccagaagagattgatattcgtggtgaagtttacatgaatata
gatgaatttgaaagaataaacagagaaagacaggaaaaaggtgagccaatttttgccaat
ccaagaaatgcagccagtggttcagtgcgtcaatttgacccctcaattacagcaagtaga
agacttcatatagcatgttacggtgttggatactatcgaggagttgaatttaaaactcag
tatgagtttattcagtggcttcggcaggcaagatttcctgttccagcatatgtaaaagtg
gcaaaaggtattgatgaagtaatagaggcgataaaagagatagaaaaacttagagcaggt
tatccttttgaaacagatggagctgttgttaaagttaatagttttgaacttcaaaaacgt
cttggtgcaaaaacacgggagccaagatgggctattgcctacaaatatcctgctcaccag
ggaattacaaaactgaaggatattgttgcaagcgttggaagaacaggtgttataacacct
gtggcaatacttgaacctgtaagaattggcggagttacagtttcaagatcaactcttcat
aactgggatgaggtaaaaagaaaagacattagaattggtgattatgtaattgtggaaaga
gctggagaagtaattccacatataattggcgttgttgttgaccgtagaacaggacaggaa
gtgattcccaagattcctgagcattgtcctgtgtgtggctcaaaaactgtaagagagtta
ggagaagttgcattaaaatgcattaactttaactgtcctgcccaagttgaagaaagaata
aagcattttgcatcacgcagagccatgaatattgaaggattgggagacaaaactgttgaa
cttttacatgaaaaaggtcttataaaaagttttgttgatctgtataagctaagacagcag
gatattaaaggacttccaggatttgctgatctttcatcaaaaaagcttattgaggcaatt
gaacgcagcaaaaagacaactcttgcaagatttctttatgctcttggaataagtcaggtt
ggtgagtatgcggctaaacttcttgctcaaaattttaaaaaacttgaggatctttatcat
gttaaaatggagcgtctcattgagatcccccagattggagaaaaaacagcaagagcaatt
gagcagttttttaataatgaagaaaacctaaaagcaatagaggagcttaaaagtttagga
ttaacaattgaaaatcctgattatcagaaagaaaaaaagcctgcttcgcttgaaggtttt
agttttgtcataacaggaaccttacctaaaccaagacacgaagtccaggaaatgattgaa
aaggctggtggcagggtttcttcttcagtatcaaaaaatacagactatttgatagtaggt
gaagagccaggaagcaaacttgcaaaagcaaaggaattaggagtgaaaattatttcttac
gaagaattactaaaaatgctggagtaa
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