Talpa occidentalis (Iberian mole): 119243162
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Entry
119243162 CDS
T07495
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
tod
Talpa occidentalis (Iberian mole)
Brite
KEGG Orthology (KO) [BR:
tod00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tod03036
]
119243162 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
tod03400
]
119243162 (SMCHD1)
Chromosome and associated proteins [BR:
tod03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
119243162 (SMCHD1)
DNA repair and recombination proteins [BR:
tod03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
119243162 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
IFT20
DUF4763
Motif
Other DBs
NCBI-GeneID:
119243162
NCBI-ProteinID:
XP_037364672
LinkDB
All DBs
Position
Unknown
AA seq
2003 aa
AA seq
DB search
MAATGGGGPSAATAEGGGADGCRTVYLFDRREEESELGDRPLQVGERSDYAGFRASVCQT
LGIAPEEKFVITTTSRKEITCDNFDETVKDGVTLYLLQSVDQLLLTATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRRIQIKLLFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKESIYSGYIRNRKPSDSVHITNDDE
RFLHHLILEEKEKTSFTAVIITGVQPEHIQYLKNYFHLWTRQLTHIYHYYIHGPKGNEKR
MSKEAGPFNNIDIEISMFEKGKAPKIVNLREIQDDMQTLYINTAADSFEFKAHVEGDGVV
EGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKAARGKRPIFECFWNGRLIPY
TSVEDFDWCAPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRPDLPSKKQGPWATYAAIE
WDGKIYKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDEIKT
VPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEARPAGTPIGALRIEIL
NKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPERFSFGLLDPPFRVGVPFNI
PLEFQDEFGHTSQLINDIQPILEASGLSLHYEEITKGPSCVIRGVTAKGPVNSCQGKNFN
LKVTLPGLKEDSQILKIRLLPGPPRRLKVKPDSEILVIENGTAFPFQVEVLDESDNITSQ
PKLIVHCKFSGAPNLPIYVVDCSSTGTSILSGSAIQVQNIKKDQMLKAKIEIPSCKDVAP
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDVMRNLIFQMYDEGEREIHI
TSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCELQGGKTVQMGQELQGEVVVIVTDQYGNQIQAFSRDSLSTLTIAGIGLDS
SYLKTTFQENTHSINVKGIKFIPGPPGNKDLCFTWHEFSDFIRVQVISGPPTKLLLIDWP
ELKESIPVINGRELQNPLIVQLCDEWDNPAPVPQVKISLIKSNYLKLTSSNQQHKTDERG
RANLGVFIVHAQPRGEHTMQVRATYNKNNIDGPIIKLMILPDPEKPIHLNVKYDKDASFL
AGDVFTDFLITVISEDNSIIKNINPARISMKMWKQSNIGKCPPANAETFSCNKIKDNDKE
DGCFYFRDKAIPNKVGAYCIQFSFMMDKANILNSEQITVDVLPNQPMKLVPEIQPATPAV
SNVRSVASRTLVKDLHLNITDDYNNQTGIDLVGTVIATIKGSNEEDTDTPLFLGKVRTLE
FPFVKGSAEITSLVLSENSPGRDSTEYFIIFEPRLPALSRTLEPYILPFMFYNDVKKQQQ
MAALTKEKDQLSKSIIMYRSLFEASKQLVDEMKCQVEEAKLRETQLRNELKTHNIDIPTA
QQMPHIETLLKKKMSEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMVIS
WHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRCLPHYRNGKLFFK
PIGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTR
DGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPIPKQCLILGEQIDLLQQYRTAVCRLGTV
NKDLNGQLEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKCNDSVRHPTKIEITDC
PIPPKRMRREAARQNRIITKTDV
NT seq
6012 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgacgggcggcggcgggccctcggcggcgacggcagagggcggcggagccgat
ggctgcaggactgtgtacttgtttgaccggcgcgaggaggagtcggagctcggggaccgg
ccgctgcaggtcggggagcgctccgactacgcggggttccgcgcctcagtgtgtcagaca
ctcggcattgcacctgaagagaaatttgttattacaacaacaagtaggaaagaaattact
tgcgataattttgatgaaactgttaaagacggagtcactctatacctgctacaatcagtc
gaccagttactactaacagctacaaaagaacgaattgacttcctacctcattatgacaca
ctggttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaatcctttgccattt
gctcttgcagaattaattgacaattcattatctgctacttctcgtaacactggtattaga
agaatacagatcaagttgctttttgatgaaacacaaggaaaacctgccgttgcagtgata
gataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtataggttgtca
aaatttacaaggcaaggtgactttgaaagtgatcactcaggatatgttcgtccagtacca
gtgccacgcagcttaaatagcgatatttcctactttggtgttgggggcaagcaggctgtt
ttctttgttggacagtcagccagaatgataagcaaacctgcagattcccaggatgttcat
gaacttgtgctttctaaagaagatttcgagaagaaggaaaaaaataaagagtcaatatat
agtggatatattagaaacagaaagccttctgattctgttcacattacaaacgatgatgag
agatttctacaccatctcatcttagaagagaaggaaaaaaccagctttactgctgtgatt
atcacaggggtacaaccagagcacatacaatatttgaaaaattattttcatctttggaca
cgacagttaacgcatatttatcattactatattcatggcccaaaaggaaatgaaaaacgg
atgtcaaaagaagctggacctttcaacaacattgatattgaaatttctatgtttgaaaag
gggaaggcacctaagattgtcaacctaagggaaatacaagatgacatgcagacgttgtat
ataaacacagcagctgatagttttgagttcaaggctcatgttgaaggagacggtgtagtg
gaagggattattcgctatcacccttttttatatgatagagaaacttaccctgatgatcca
tgctttccatcaaagttaaaagatgaagatgatgatgatgattgtttcatacttgagaaa
gcagcaagaggaaaaagaccaatttttgaatgtttttggaatggacggctaataccatat
acatctgttgaagactttgactggtgtgctcctccgaagaagagagggcttgcaccaatt
gagtgctacaacagaatatctggtgcattattcactaatgacaaattccaagtcagcaca
aataaactgacttttatggatcttgagctaaaactgaaagataagaacaccctttttaca
aggattttaaatggacaggaacaacgaatgaaaattgacagagaatttgctttgtggctg
aaggactgtcatgaaaagtatgacaaacaaataaagtttacactttttaaaggaattatt
acacgtcctgatcttccttctaagaagcagggcccttgggccacatatgcagcaatagaa
tgggatggaaaaatatacaaagcaggacaactggtcaagacaatcaagacacttcctctc
ttttatggaagcatagtaaaatttttcctttatggtgatcatgatggagaagtatatgcc
acaggaggagaagttcagattgcaatggaacctcaagcactatatgatgaaataaaaact
gtgccaattgcaaagctggataggacagttgctgagaaagctgtaaaaaaatatgtagaa
gatgaaatggcaaggctcccagatagattgtcagtaacttggccagaaggagatgaatta
ctgccaaatgaggctagacctgctggaacacccattggtgcattaagaattgaaatactc
aacaaaaaaggggaagcaatgcagaaacttccaggaacaagtcatggagggtcaaagaaa
ctcctggttgagctcaaggttatattacactcttcaagtggaaataaagaaatcatttct
catattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaaaatattcaa
aagctggggaattatacattgaaattacaagttgtattgaatgaaagtaatgcagacact
tatgcaggaagaccactaccatctaaagcaattaagttttctgttaaagagggtaagcca
gaaagattttcatttggtcttctggatcctccttttcgtgttggagtcccattcaacatc
cctctggaatttcaggatgaatttggtcatactagtcaactgataaatgatattcagcca
attcttgaagcaagtggtttatctttacattatgaagaaataactaaaggaccaagttgt
gtaattcgaggtgttacagctaagggtcctgtaaactcttgtcaaggcaagaattttaat
ctgaaggtaactctgccaggtttaaaagaagactcacagattttgaaaattagattacta
ccaggtccccctcgtcgattaaaagtgaaacctgattctgaaattttagttatagagaat
ggaacagctttcccgtttcaggtggaagttttggatgaatcagacaatataacatcacaa
ccaaaattgattgttcattgtaagttttcaggtgctccaaaccttcccatctacgttgtg
gattgcagtagtactggaaccagtattttatcaggatctgcaattcaagttcaaaatatt
aaaaaagaccagatgcttaaagcaaaaattgaaatacctagttgtaaagatgtggcaccc
gtggagaagactattaagttgcttcctagcagtcatgttgcaagattacagatattcagt
gtggaaggtcaaaaggcaatccagatcaaacatcaggatgaggttaattggatagcaggc
gatgtcatgcgtaatcttatttttcaaatgtatgatgaaggagaaagagaaatacatata
acatcagctttagcagagaaaattaaagttaattggactcctgagattaacaaagagcac
ttgctacagggtctgcttcctgatgtacaagtaccaacatctgtaaaagatatgcgttat
tgccaggtttcattccaggatgatcacgtgtctttggaaagtgcatttacagtaagacca
cttcctgatgaacctaaacatctaaaatgtgagttacaaggaggaaaaacagtgcagatg
ggccaagagcttcaaggagaagtagttgtaatagttacagatcagtatggaaatcagatt
caagcattttcacgagattctttatctaccttaacaattgctggaattggacttgatagc
tcatatttgaaaactacttttcaggaaaatacacacagtatcaatgtaaaaggcatcaaa
tttattccaggtcctcctggaaataaggatctttgttttacttggcatgagttttctgac
tttattcgagtacaggtaatttctggaccaccaactaagctacttcttatagattggcca
gaattaaaggagtctattccagtgattaatggaagagaactacaaaatcctctcattgtt
caactttgtgatgagtgggataatccagcacctgtaccacaggttaaaataagtctcata
aaatctaactatttaaaactcacttcttcaaatcaacagcataaaacagatgaaaggggc
agggctaatttgggagtattcattgttcatgcccagcctagaggagaacatactatgcag
gttagagccacctataacaagaataacatagacggacctataattaagttaatgattctt
ccagaccctgaaaaacccattcatctcaatgttaaatatgacaaagatgcttccttttta
gcaggggatgttttcactgattttctgattactgttatttctgaagacaatagtatcatt
aaaaatattaatccagcacgtatttccatgaaaatgtggaagcagtctaacattgggaaa
tgtccaccagcaaatgcagaaacatttagttgtaataaaatcaaagataatgacaaggaa
gacggctgcttttacttcagggataaagcgattcctaacaaagtgggggcatattgtatc
cagtttagttttatgatggataaagcaaatattcttaacagtgaacagattacagttgat
gttttacctaatcagcctatgaagttagttcctgaaattcagccagctacaccagctgtt
tcaaatgttcgctcagttgctagtaggaccttggtcaaagatttacatcttaatatcacg
gatgactacaacaatcagactggaattgatttggttggcactgtaatagctaccatcaaa
ggttctaacgaggaagatactgatacaccactctttcttgggaaagttagaacacttgaa
tttccctttgtgaaaggctcagctgaaatcacgagtctagtgctgtcagaaaacagtccg
ggaagggatagtactgaatattttattatatttgagcctcggctaccagctttatcaaga
acattagaaccatatattctaccatttatgttttacaatgatgttaagaagcagcaacaa
atggcagcacttacaaaagaaaaggaccagttatcaaagtctattattatgtatagaagt
ttatttgaagccagcaaacagcttgttgatgaaatgaagtgccaagttgaagaagcaaaa
ttaagagagactcagctgcgaaatgaactaaaaacacataatatagacattcccacagca
caacagatgccacacattgaaacacttttgaaaaaaaagatgtcagaacaggaagaacta
aagaaaaaacctagaagatcatgtactcttcctaactatactaaaggcagtggagatgtt
ttggggaagattgcacacctagcacaaattgaagatgatagagctgcaatggttatttct
tggcatctggcaagtgacatggattgtgtagtcaccttaaccactgatgctgcacgtcgt
atctatgatgaaacccaaggtcgtcagcaagtgttgccccttgattctatttataagaag
actcttccagattggaaaagatgtctacctcattaccgaaatggaaaactgttttttaaa
cccattggagatccagtctttgcccgagatttgttaacatttccagataatgtagaacat
tgtgaaacagtatttggtatgctgttaggagacaccattattttggataatctggatgct
gccaatcattatagaaaagaggttgttaagattacacactgtcctacactgctaaccaga
gatggagatcgtattcgaagcaatggaaagtttgggggccttcagaataaagctcctcca
atggataaacttcggggtatggtatttggagctccaataccaaaacagtgcctgatctta
ggggagcaaattgatcttcttcaacagtatcgtactgcagtatgcaggttgggcactgtg
aacaaggaccttaatggtcaattagagtaccttcacactcctgatatgaagaagaaaaag
caagaacttgatgaacaagagaaaaatctgaagctaatagagcaaaaactaggtatgact
cccacacgtaagtgtaatgactcagtgcgtcatccaaccaagattgaaattacagattgt
ccaattcctcctaagagaatgagaagagaagctgcaagacaaaataggattataaccaaa
acagatgtgtga
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