Talpa occidentalis (Iberian mole): 119245013
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Entry
119245013 CDS
T07495
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
tod
Talpa occidentalis (Iberian mole)
Pathway
tod03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tod00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
119245013 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tod03000
]
119245013 (KDM2B)
04121 Ubiquitin system [BR:
tod04121
]
119245013 (KDM2B)
03036 Chromosome and associated proteins [BR:
tod03036
]
119245013 (KDM2B)
Enzymes [BR:
tod01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
119245013 (KDM2B)
Transcription factors [BR:
tod03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
119245013 (KDM2B)
Ubiquitin system [BR:
tod04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
119245013 (KDM2B)
Chromosome and associated proteins [BR:
tod03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
119245013 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
119245013 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
DUF7885
Cupin_8
JmjC
AppA_SCHIC
Motif
Other DBs
NCBI-GeneID:
119245013
NCBI-ProteinID:
XP_054551338
LinkDB
All DBs
Position
Unknown
AA seq
1306 aa
AA seq
DB search
MEAEKDSGRRLRAIDRQRYDENEDLSDVEEIVGARGFSLEEKLRSQLYQGDFVLAMEGKD
FNYEYVQKEALRVPLIFREKDGLGIKMPDPDFTVRDVKLLVGSRRLVDVMDVNTQKGTEM
SMSQFVRYYETPEAQRDKLYNVISLEFSHTKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQ
TEATNAIAEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLHNL
ALYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILH
SFNVPMQLRIYEIEDRTRVQPKFRYPFYYEMCWYVLERYVYCVTQRSYLTQEYQRESMLI
DAPRKPSIDGFSSDSWLEMEEESCEQQPPEEEEKEEEEGAEADRGPRTPADRSASPASAA
EDQEAPGKEPKTPALRLLKRTLSTESEESVKSTAMPVDYPRTPTGSPATEVSARWTHLTE
FELKGLKALVEKLESLPENKKCVPEGIEDPQALLEGVKNVLKEHADDDPNLAITGVPVVT
WPKKTPKNRAVGRPKGKLGPASSVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCK
DMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLMECSIC
NEIIHPGCLKIKESEGVVNDELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLPGSLL
KEQKMNRDNKDGQEPAKRRSECEEAPRRRSDEHPKKVPPDGILRRKSDDGHLRRKRKYEK
PQELIGRKRASTLQTSPGSSSHLSPRPPLGSSLSPWWRSSLTYFQQQLKPGKEDKLFRKK
RRSWKNAEDRMALAKPLRRFKQEPEDDLPEAPPKTRESDHSRSSSPTAGPSTEGAEGPEE
KKKVKMRRKRRLPNKELSKELSKELNQEIQKTESSLANENHQPIKSEPESDEEPKRPLGL
CERPHRFSKGLNGTPRELRHQLGPGLRSPPRVISRPPPSVSPPKCIQMERHVIRPPPISP
PPDSLPLDDGAAHVMHREVWMAVFSYLSHQDLCVCMRVCRTWNRWCCDKRLWTRIDLNHC
KSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRDLVLSGCSWIAVSALCSS
SCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQMDNRSKLRNIVELRLAGLDITDASL
RLIIRHMPLLSKLHLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLSFFK
RCGNICHIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagagaaagactctggaagaagattgcgcgcgattgaccgccagcgctacgac
gagaacgaggacctgtcggacgtggaggagatcgtgggcgcgcgcggcttcagcctggag
gagaagctgcgcagccagctgtaccagggcgacttcgtgctcgccatggagggcaaagat
ttcaactatgagtacgtgcagaaagaagctctcagggtccccctgatatttcgggaaaag
gatggactgggaattaaaatgcctgaccctgatttcacagtccgggatgtcaaactccta
gtggggagccggcggctggtggacgtgatggacgtgaacacgcagaagggcacggagatg
agcatgtctcagtttgtgcgctactacgagacgcccgaggcccagcgggacaagctgtac
aacgtcatcagcctggagttcagccacaccaagctcgagcacttggtcaagcgcccgact
gtggtagacctggtggactgggtggacaacatgtggccccagcacttgaaggagaagcag
acggaagccacaaatgccatcgcagagatgaagtaccccaaagtgaagaagtactgtctg
atgagcgtgaaaggctgtttcactgacttccacatcgacttcggaggcacttccgtctgg
taccatgttttccggggcgggaagatcttttggctgatccctcccaccctgcacaacttg
gcgctgtacgaggagtgggtgctgtcgggcaaacagagcgacatcttcctgggagaccgt
gtagagcgatgtcagagaattgagctgaagcagggctacacgttcttcatcccttccggt
tggatccatgctgtctatacccccgtcgactctctggtgttcggcggaaacatcctgcac
agtttcaacgtgcccatgcagctgcgcatctacgagatcgaggacagaacccgggtgcag
cccaaattccgttaccccttctactatgagatgtgctggtatgtcttggagcggtacgtg
tactgtgtgacccagcggtcctacctcactcaggaataccagagagagtcgatgcttatt
gatgccccgagaaagcccagcatagacggcttctcttctgattcctggctggagatggag
gaggagtcttgtgagcagcagcccccagaggaggaggagaaggaggaggaggagggcgcg
gaggcagacagaggccccaggacgcccgccgaccgctctgcctcgcccgccagcgccgcc
gaggaccaggaggcccccgggaaggagcccaaaacgcctgccttgcggctcctcaaaagg
actttgtctaccgagtcagaggagagcgtgaagtccacggccatgcccgtcgactacccc
aggacgcccaccggctcgcccgccaccgaggtctctgccagatggactcacctcaccgag
tttgagctgaagggcctgaaggcgctggtggagaagctggagtcccttccggagaacaag
aagtgtgtgcccgagggcatcgaggacccccaggcgctcctggagggtgtgaagaacgtc
ctgaaggagcacgcagatgacgaccccaatctggccatcactggggttcctgtagtcact
tggccaaagaagactccaaagaaccgggcagtaggtcggcccaagggcaagctgggcccg
gcctcctcagtgaagttggccgccaaccggacgacggcgggagctcgccggcgccggacg
cgatgccgcaagtgcgaggcctgcctgcggacggagtgcggagagtgccacttctgcaag
gacatgaagaagttcgggggccccgggcgcatgaagcagagctgcatcatgaggcagtgc
attgcgccagtgctgccccacaccgccgtgtgcctggtgtgcggcgaggcggggaaggag
gacacggtggaggaggaggaaggcaagttcaacctcatgctcatggagtgctccatctgc
aacgagatcatccaccctggatgccttaagattaaggagtcggagggcgtggtcaatgat
gagcttcccaactgctgggagtgtccgaagtgcaaccacgccggcaagaccgggaaagcc
tacaagcaaaagcgtggccctggcttcaagtatgcctccaacctgccgggctcgctgctc
aaggagcagaagatgaaccgcgacaacaaggacgggcaggagccggccaagcggaggagc
gagtgtgaggaggcgccccggcgcaggtcggacgagcaccccaagaaggtgccccccgac
ggcatcctgcgccgaaagtcggacgatgggcacctgcggcggaagcggaaatacgagaag
ccgcaagagctgattggacgcaagcgagcctcgacgcttcaaacgtcccccggttcctcc
tctcacctctcgccgaggccccctctaggcagcagcctcagcccctggtggagatccagt
ctcacttacttccagcagcagctcaagcctggcaaagaagataagcttttcaggaaaaag
cggcgctcctggaagaacgcggaggaccggatggcgctcgccaagcccctccggcgcttc
aagcaagagcccgaagatgatctgcccgaggcccccccaaagacccgggagagcgaccac
tcccgctccagctcccccacggcgggccccagcaccgagggcgccgagggccccgaggag
aagaagaaggtcaagatgcgccggaagaggcggctccccaacaaggagctgagcaaggag
ctgagcaaggagctcaaccaggagatccagaagacggagagcagcctggccaacgagaac
caccagcccatcaagtcggagcccgagagcgacgaggagcccaagcggcccctgggcctc
tgcgagcgcccccaccgcttcagcaaggggctcaacggcaccccccgggagctgcggcac
cagctggggcccggcctgcggagcccgccccgcgtcatctcccggccccctccctccgtg
tccccgcccaagtgcatccagatggagcgacacgtgatccggccgccccccatcagcccc
ccgcctgactcgctgcccctggatgacggggcagcccacgtcatgcaccgggaggtgtgg
atggccgtcttcagctacctcagccaccaagacctgtgcgtctgcatgcgggtctgcagg
acctggaaccgctggtgctgcgataagcggttatggacccgcatcgacctgaaccactgc
aagtccatcacgcccctgatgctgagcggcatcatccggcggcagcccgtctccctggac
ctcagctggaccaatatctccaagaagcagctgagctggctcatcaaccggctgcctggg
ctccgagacttggtgctgtcgggctgctcgtggatcgcagtctcagccctctgcagctcc
agctgcccgctgctccggaccctggatgtccagtgggtggaaggactaaaggacgcccag
atgcgggacctcttgtccccacccacagataacaggccgggtcagatggacaatcggagc
aagctccggaacatcgtggagctgcggctggcgggcttggacatcacggacgcctctctg
cggctcatcatacgccacatgcccctgctctccaagctccacctcagttactgtaaccac
gtcactgaccagtccatcaacctgctcaccgctgtgggcaccaccacccgggactcctta
actgaaatcaacctgtcagactgcaataaggttactgatcagtgcctgtccttcttcaaa
cgctgtggcaatatctgtcatatagacctgaggtactgcaagcaagtcaccaaggaaggc
tgtgagcagttcatagccgaaatgtctgtgagtgtccagtttggacaagtggaagaaaaa
ctcctgcagaaactgagttag
DBGET
integrated database retrieval system
