Trabulsiella odontotermitis: QMG90_06975
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Entry
QMG90_06975 CDS
T09053
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
toe
Trabulsiella odontotermitis
Pathway
toe03030
DNA replication
toe03410
Base excision repair
toe03420
Nucleotide excision repair
toe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
toe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QMG90_06975 (ligA)
03410 Base excision repair
QMG90_06975 (ligA)
03420 Nucleotide excision repair
QMG90_06975 (ligA)
03430 Mismatch repair
QMG90_06975 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
toe03032
]
QMG90_06975 (ligA)
03400 DNA repair and recombination proteins [BR:
toe03400
]
QMG90_06975 (ligA)
Enzymes [BR:
toe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QMG90_06975 (ligA)
DNA replication proteins [BR:
toe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QMG90_06975 (ligA)
DNA repair and recombination proteins [BR:
toe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QMG90_06975 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QMG90_06975 (ligA)
MMR (mismatch excision repair)
DNA ligase
QMG90_06975 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QMG90_06975 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
DUF2229
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
WHP32650
LinkDB
All DBs
Position
1458423..1460438
Genome browser
AA seq
671 aa
AA seq
DB search
MDSIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPDLITPDSPTQ
RVGAAPLTAFSQIRHEIPMLSLDNVFDEESFLAFNKRVQDRLKSADALTYCCELKLDGLA
VSILYENGVLVQAATRGDGTTGEDITTNVRTIRAIPLKLRGDNIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGIGILEGGELPDTHL
GRLLQFKEWGLPVSDRVTLCDSPDEVLAFYHKVEADRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTIVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDRVVIRRAGDVIPQVVNVILSERPDDTRPVEFPTHCPVCGSDVERVEG
EAVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAG
VLTGLDRMGPKSAQNVVDALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTIEALAA
ASVEELQKVQDVGIVVATHVFNFFAEESNRDVIQQLRDQGVRWPAPVVINAEEIDSPFAG
KTIVLTGSLSQLSRDEAKTRLTALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVI
DEAEMIRLLGA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggactctattgaacaacaactaacagaactgcgaaccacgcttcgccatcatgaatat
ctctatcacgtgatggatgcccctgaagtcccggatgcggaatatgaccgcttgatgcgc
gaactgcgtgagctggaagctcaacatcctgacctgatcaccccggactcccccacgcag
cgagtgggtgcggcgccactgacagccttcagccagatccgccatgaaatccctatgctg
tcgctggataacgtctttgatgaagagagctttctcgctttcaacaaacgcgtgcaggat
cgcctgaaaagcgctgacgcattgacctactgctgtgagctgaagctcgacggactggcg
gtcagcattctgtatgaaaatggcgtgctggtgcaggcggcaacgcgtggcgatggcacc
actggtgaggacatcaccaccaacgtgcggactatccgcgccattccgctcaagcttcgc
ggcgataatattcctgcccggctcgaagtgcgcggcgaagtgttcctgccgcaggccgga
tttgagaaaatcaacgaagaagcccgtcgcactggtggcaaggtgtttgctaacccgcgt
aatgccgcggcaggctctctgcgccagctcgacccgcgcattacagcgaagcgaccgctc
actttcttttgctacggcatcggcatcctggaagggggggaattaccggatacccacctg
gggcgtttgctgcaatttaaagagtggggtcttccggtcagcgaccgggtgacgctgtgt
gattcccccgacgaggtgctggcgttttaccataaagtagaagcggatcggcccacgctt
gggtttgatatcgacggcgtggtgatcaaagtcaactcgctggcgttgcaggaacaactg
ggtttcgtggcgcgtgcgccgcgctgggcggtagcctttaagtttccggcgcaggagcaa
atgaccatcgtgcgtgacgttgaattccaggtcgggcgcactggcgctattacgcccgtg
gcgcgtcttgagccggtgcaggtggcgggtgtgctggtcagcaacgcgactttgcataat
gccgatgaaatcgagcgtctggggctgcggattggcgaccgtgtggtgatccgccgtgcc
ggtgacgtcatcccgcaggtggtcaacgttatcctttctgagcgccctgacgatacccgt
cctgtcgaattcccaacccactgcccggtatgcggctctgatgtagaacgcgtcgagggt
gaagccgtgacgcgttgcacaggcgggcttatctgcggtgctcagcgcaaagaatcactc
aagcattttgtctcgcgccgggcgatggacgttgatggcatgggcgacaaaatcatcgac
caactggtggaaaaagagtacgtccacacgcccgccgatttgttcaaactgacggcgggt
gtgctgacagggctggatcgcatggggccgaaatcggcacaaaatgtggtggatgcgctg
gaaaaggcaaaagaaaccacctttgcccgtttcctgtatgcgcttggtatccgcgaagtg
ggtgaagcgacggcggccgggctggcagctcatttcggcaccatcgaggcactggcagcg
gcgtctgttgaagagctgcaaaaggtgcaggacgtcggcattgtggtcgccacgcatgtc
ttcaacttctttgccgaagagagtaaccgcgacgttattcagcaacttcgcgatcagggc
gtgcgctggcctgcgcccgtggtcatcaacgctgaagagattgacagcccgtttgccggg
aaaaccatcgtgctgaccggcagcctgagccagctttctcgtgacgaggcgaaaacgcga
ctcactgcgctgggcgcaaaagtggcgggcagtgtgtcgaagaaaaccgatctggtgatt
gccggtgaagcggcaggctctaagcttgccaaagctcaggaactggggattgatgtcatc
gatgaagcagaaatgatacggctgctgggagcgtaa
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