Thermoleptolyngbya oregonensis: HNI00_08820
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Entry
HNI00_08820 CDS
T09452
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tog
Thermoleptolyngbya oregonensis
Pathway
tog03030
DNA replication
tog03410
Base excision repair
tog03420
Nucleotide excision repair
tog03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HNI00_08820 (ligA)
03410 Base excision repair
HNI00_08820 (ligA)
03420 Nucleotide excision repair
HNI00_08820 (ligA)
03430 Mismatch repair
HNI00_08820 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tog03032
]
HNI00_08820 (ligA)
03400 DNA repair and recombination proteins [BR:
tog03400
]
HNI00_08820 (ligA)
Enzymes [BR:
tog01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HNI00_08820 (ligA)
DNA replication proteins [BR:
tog03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HNI00_08820 (ligA)
DNA repair and recombination proteins [BR:
tog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HNI00_08820 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HNI00_08820 (ligA)
MMR (mismatch excision repair)
DNA ligase
HNI00_08820 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HNI00_08820 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Auto_anti-p27
RNA_pol_A_CTD
HHH
Motif
Other DBs
NCBI-ProteinID:
WOB43249
UniProt:
A0AA96Y5W5
LinkDB
All DBs
Position
2021445..2023541
Genome browser
AA seq
698 aa
AA seq
DB search
MAAKPPNSATASPQAPTPAQRAAELRNLLNQASYEYYVLDAPTLPDAVYDQLYRELQELE
AADPTLISPDSPTQRVGDRPSSQFTSVRHNIPLYSLENAFNLAEVATWDTRWRRYYATVA
EAQPALPDSAYVCELKIDGSALALTYENGLLVRGATRGDGVTGEDITPNVRTIRSIPLRL
KGEHLPPVVEVRGEAFLPLDVFQQINQEREEAGEALFANPRNAAAGTLRQLDSRIVARRR
LDFFAYTLHLAGDGNFPKPASQWEALDLLQTLGFRVNPNRKLCESLEEVRQFADHWERAR
FDLPYLTDGLVIKLNGLALQERLGFTQKFPRWAIALKYPAEEAPTVVQGISVQVGRTGAV
TPVAELAPVQLAGTTVSRATLHNADFIAALDVRVGDTVIVRKAGEIIPEVVRVLPELRPA
GAEPFQLPTHCPVCGQPLVRPEEEAVTRCVNSSCPAIVRGSLVHWASRQALDINGLGEKW
VQQLGDRGLLNSVADLYDLTAEQLIGIDRMGKKSAENLVRAIAQSKTQPWWRVLFGLGIR
HVGAVNAQTLAEAFPTVEALAAAEESDIAAVYGIGPEIARSVYQWFRVPANQALVERLRA
AGLTLAGEAKPASDKPQTLAGKTFVLTGTLPTLKRDEAAERIKAAGGKVTSSVSKKTDFV
VVGEDAGSKLEKAIALKITQLSEADLLKLLSNSEVASP
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
gtggcagccaaacctcccaattctgcaactgcttctccccaagccccaacgccagcgcag
cgggccgccgaactgcggaacctgctgaaccaggccagctatgaatattacgtgctggat
gcgccaacgctgcccgatgcggtatatgaccagctttatcgagagcttcaggaactcgaa
gccgcagacccgacgctgatttcgcccgacagtcccacccagcgcgtgggcgatcgcccc
tcgtcccaattcacctccgtccgccacaatattccgctctacagcctggaaaacgccttc
aacctggcagaagttgccacctgggacacgcgctggcgacgctattatgcgaccgttgcc
gaggctcagcccgcgctgcccgactcggcctatgtttgcgagctaaaaattgacggctct
gccctggcgctgacctacgaaaacgggctgctggtgcgcggggcgacgcggggcgatggc
gtgacgggggaagacattacgcccaacgtgcggacgattcgctcgattccgctgcggctg
aagggcgaacacctgccgcccgtggtggaggtgcggggcgaggcgtttttgccgctggac
gtgtttcagcagattaatcaagagcgagaagaggcgggcgaggcgctgtttgccaatccg
cgcaacgcggcggcgggaaccctgcgccagttggattcgcgaattgtggcgcggcggcgg
ctcgacttttttgcctacacgctgcatcttgcaggagatgggaatttccctaagcctgcg
tctcagtgggaagcgctggatttgctgcaaacgctcggctttcgggtgaatccgaaccgc
aagctgtgcgaatccttggaggaggtgcgccagtttgccgaccactgggagcgggcccgg
tttgacctgccctacctcaccgacgggctggtgatcaagctgaacgggctggcgttgcag
gaacggctgggctttacccaaaagtttccgcgctgggcgatcgccctcaagtatcccgcc
gaagaagcgccgaccgtcgtgcagggtatctccgtgcaggtggggcggacgggcgcggtc
acgcctgttgcagaattggccccagtgcagcttgcaggcacgactgtttcgcgggcgacg
ctgcataatgccgacttcatcgcggcgctggatgtgcgcgtgggcgatacggtgattgtg
cgaaaggcgggcgaaatcattcccgaagtggtgcgcgtgctgccggaattgcgacccgcc
ggggcggaaccgtttcaactgccgacccattgcccggtgtgcggtcagcccctggtgcgc
ccggaagaggaggccgtcacccgctgcgtgaattcatcctgtccggcgatcgtgcgcggt
tccctggtgcattgggcctcgcggcaggcgcttgatatcaacgggctgggcgagaagtgg
gtgcagcagttgggcgatcgcggcttgttgaacagcgttgccgacctgtatgacctgacg
gcggagcaactgatcggcattgaccggatgggcaaaaaatccgctgaaaatctagttagg
gcgatcgcccaatccaaaacccaaccctggtggcgcgtcctatttgggttgggtattcgg
cacgtcggcgcagtcaacgcgcaaacgctggccgaagcctttccaaccgtcgaagccctg
gccgccgctgaagaatcggacattgccgctgtctacggcattggcccggaaatcgctcgg
tcggtctatcagtggttccgtgtgcccgccaaccaagcgctcgtggagcggctgcgggcg
gcagggctgactctggcgggcgaggcgaaacctgcatctgacaaaccccaaacgctagca
ggcaaaacctttgtgctgacgggaaccctgcccacgctgaaacgggatgaagccgctgaa
cgaattaaagcagcaggcggcaaggtgacgagttccgttagcaagaagactgatttcgtg
gtcgtgggtgaagacgcggggtcaaaattggaaaaggcgatcgccctaaaaatcacccaa
ttgtcagaggcggatctcctcaaattactgtcaaattcggaggtagcttcgccctga
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