Tetragenococcus osmophilus: C7K38_09860
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Entry
C7K38_09860 CDS
T05711
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
too
Tetragenococcus osmophilus
Pathway
too03030
DNA replication
too03410
Base excision repair
too03420
Nucleotide excision repair
too03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
too00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C7K38_09860 (ligA)
03410 Base excision repair
C7K38_09860 (ligA)
03420 Nucleotide excision repair
C7K38_09860 (ligA)
03430 Mismatch repair
C7K38_09860 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
too03032
]
C7K38_09860 (ligA)
03400 DNA repair and recombination proteins [BR:
too03400
]
C7K38_09860 (ligA)
Enzymes [BR:
too01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C7K38_09860 (ligA)
DNA replication proteins [BR:
too03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C7K38_09860 (ligA)
DNA repair and recombination proteins [BR:
too03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C7K38_09860 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C7K38_09860 (ligA)
MMR (mismatch excision repair)
DNA ligase
C7K38_09860 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C7K38_09860 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
Zn_ribbon_NUD
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AYW48650
UniProt:
A0ABM7AAZ9
LinkDB
All DBs
Position
complement(2034167..2036188)
Genome browser
AA seq
673 aa
AA seq
DB search
MKVVEQSIVKRAKELRNQLNQYSYEYYVKDDPSVEDFVYDSLYQELVKIENNHPELVSED
SPTQRVGGRVLEGFEKVEHDIPLYSLNDVFNKEDIIAFDKRVQKALNRQVSYTCELKIDG
LSVSLRYENGKLVQGATRGDGTVGEDITENLRTVRSIPLQLKNSVSLEARGECYMPKKSF
MRLNQHREEEGQDVFANPRNAAAGSLRQLDSKITAKRNLSTFLYSVADTGSLASSTQFDA
LQELADLGFQTNQERKLCHSIDEVWDYIEDFQEKRGDLSYEIDGVVIKVNDFDQQEKLGY
TVKAPRWAIAYKFPPEEAQTTIQDIQWTVGRTGVLTPTAIMDPVKVAGTTVSRASLHNDD
YIQEKDIRLNDKVVIYKAGDIIPEVAHVIEEERSKDSEVYQAPQHCPICGSKVVHLDEEV
ALRCINPKCPAQIKEGLNHFVSRNAMNIEGLGPRILNQMYENGLVKDVADLYYLKEEDLL
TLDKIKEKSANNILNAIAESKDRSGDRLIFGLGIWHVGAKAAKILLAHFKTVRGLENASA
EEIHSLYTLGGTIADSVVTYFSKKEVDELLNKLEKAGVNFDYLGKTSSELAEVDSVFKDQ
TVVLTGKLNHYTRADAKSRIENLGGKVTESVSQSTDIVIAGEDAGSKLTKAQDLNVTVWN
EDQMVKAFEDSST
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtggtcgagcaatctattgtaaaaagagctaaagagttaagaaaccaattaaac
caatattcctatgaatactatgtaaaagacgacccaagcgttgaggattttgtttatgat
tctttatatcaagagcttgttaaaattgaaaacaaccatccggaattagtctctgaagac
tctcctacccaacgcgtgggaggacgggtgctagagggatttgagaaggttgaacatgat
attcctttatatagtttaaacgatgtttttaataaagaagatattatagcttttgataag
cgagtgcaaaaggctttaaaccgccaagtttcttatacttgtgagttgaaaatcgacggg
ttatctgtgtctttgcgctatgaaaatggaaaattagtacaaggagctacgcgaggagac
ggtacagtcggtgaagatattactgaaaatcttagaaccgttcgttctattcctttacaa
ttaaaaaactcagtctcgctggaagctcgtggagagtgttatatgcctaaaaaatctttt
atgcgtttaaaccagcatagagaagaagaagggcaagatgtgtttgctaatccgagaaat
gctgccgcaggaagtttacgacagctagattcgaaaataaccgctaagcgtaatttaagt
acatttttatattctgtggctgatacaggttctttagcttcttctacacaatttgatgca
ttgcaagaattagcagatttaggttttcaaactaaccaagaacgtaaactttgccattca
atagatgaagtttgggactatatcgaagatttccaagaaaaaagaggcgacttgtcctat
gaaattgacggcgtggtcattaaagtaaatgatttcgaccaacaagaaaaattaggctat
acagttaaagcgcctcgttgggcaattgcatataaatttccgccagaagaagcacaaaca
actatccaagatattcaatggacagtagggcgcaccggcgttttgactccaacagcaatt
atggatccagtaaaagttgcggggaccaccgttagtcgggcaagtttacacaatgatgat
tatattcaggaaaaagatatacgtctaaatgataaagtagtcatttataaagctggagat
attattcctgaagttgcgcatgtgattgaagaagagcgtagcaaagatagtgaagtatat
caagcaccacaacattgccctatttgtggtagtaaagtagttcatttggatgaagaagtc
gccttgcgttgtattaacccaaaatgtccagctcaaattaaagaaggtctcaaccatttt
gtttcaagaaatgcgatgaatattgaagggttagggccaagaattcttaatcagatgtat
gaaaatggtctagttaaagacgtggctgatttatattatttaaaagaagaagatttgtta
actcttgataaaattaaggaaaaatcagcaaataatatattaaatgcgatagcagaaagt
aaggatcgttcaggcgatcgacttatttttggcttaggcatttggcatgtaggtgccaaa
gcagctaaaattctgctagcacatttcaaaacagtccgcggattagaaaatgcatcagca
gaagaaatccattcactttatactttaggcggaaccattgctgatagcgtagttacttat
ttctccaaaaaagaagtagatgagttgcttaataagttagaaaaagcgggggttaatttt
gactatctaggaaaaacttctagtgaattggcagaagttgattccgtctttaaagatcaa
acggttgttttgacagggaagctaaaccattatacacgggcagacgctaaaagtcgtatt
gaaaatctgggtggaaaagtcactgaaagtgtctcacaaagtactgatattgtaatagca
ggtgaggacgctggcagtaaactaacgaaagctcaagatttaaatgttacggtatggaat
gaagatcaaatggttaaagcttttgaagatagttcaacgtaa
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