Thermodesulfobacterium geofontis: TOPB45_1132
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Entry
TOPB45_1132 CDS
T01547
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
top
Thermodesulfobacterium geofontis
Pathway
top03030
DNA replication
top03410
Base excision repair
top03420
Nucleotide excision repair
top03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
top00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TOPB45_1132
03410 Base excision repair
TOPB45_1132
03420 Nucleotide excision repair
TOPB45_1132
03430 Mismatch repair
TOPB45_1132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
top03032
]
TOPB45_1132
03400 DNA repair and recombination proteins [BR:
top03400
]
TOPB45_1132
Enzymes [BR:
top01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TOPB45_1132
DNA replication proteins [BR:
top03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TOPB45_1132
DNA repair and recombination proteins [BR:
top03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TOPB45_1132
NER (nucleotide excision repair)
GGR (global genome repair) factors
TOPB45_1132
MMR (mismatch excision repair)
DNA ligase
TOPB45_1132
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TOPB45_1132
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
HHH_3
UPF0758_N
RlmA_N
HMBD
ERp29
Motif
Other DBs
NCBI-ProteinID:
AEH23220
UniProt:
F8C669
LinkDB
All DBs
Position
complement(1130978..1133038)
Genome browser
AA seq
686 aa
AA seq
DB search
MPEEAKEKREIPQEIIEKVKKLREEIEYHNYRYYVLDSPVISDAEYDALMRELRRLEEMY
PELITPDSPTQRIGFKPAEGFKEVPHAEPMLSLDDAMNEEEVIEFDKRIKRFLGLPEETP
IEYTVEPKIDGLAVELVYENGSLSIGATRGDGYVGEDVTNNIKTIPTVPLRLRKFTEDAP
DIPPRIDVRGEVYMNKDEFKRINEERIRKGELPFANPRNAAAGSLRQLDPSITAKRKLDI
FYYGVGKVEGYKFKTQWEILQTLPKWGLKVNPYVKLVKDIKEAINYHHHIERIRDTLPYE
IDGVVIKVNDLSLWEKLGTKARSPRYALAYKFQPTQVTTQLLDVVFQVGRTGAITPVAVL
KPVQIGGVIVERATLHNEDFIKNLDIRIGDWVLVQRAGEVIPEIVMPIKERRTGQEKEII
FPTHCPICGTKLIKKPEEAIWRCPNKNCYAQAVRKILHFASRNAMNIEGLGEKVARDLVD
RGLVQNVADLYYLKWEDFMKLPGFAYKKAKNLYEAIQKSKKTTLGRFIYALGIRHVGEAM
AQMLAEKFKSLDKLMNASMSDLLSIPGVGYEVAKSIVEFFKNEENRKMIQRMLDAGVTFV
EEEKEEKPKILEGLTFVFTGTLKSMTRDEAKEIVRELGGKTTDSVSKNVDYVVAGDNPGS
KYQRALQLGVKIINEEEFLKLIGKAK
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaagaagcaaaagaaaaaagagaaattcctcaggaaataattgaaaaggttaaa
aaattaagagaagagattgaatatcataattacagatattatgttcttgattctcctgtt
atttctgatgctgaatatgatgctctaatgcgagaattaagaagattagaagaaatgtat
ccagaattaattacacctgattctccaacccaaagaattggttttaaacctgcagaggga
tttaaagaggtacctcatgcagagccaatgctttctttagatgatgctatgaatgaggaa
gaagttattgaatttgataaaagaattaaaagatttttgggactacctgaagaaactcct
atagagtatactgttgagcccaaaatagatggtcttgcagtagaacttgtttatgaaaat
gggagtttatcaataggggcaacaagaggagatggatatgttggagaagatgttaccaat
aatatcaaaactatccctactgttcctctaagattaagaaaatttactgaagatgcacca
gatattcctcctcgtattgatgtaagaggagaagtatatatgaataaagatgaatttaaa
agaataaatgaagaaagaattcgcaaaggagaacttccttttgccaaccctcgtaatgcc
gcagcaggatctttaagacaacttgatccctcaattacagcaaaaagaaaacttgatatt
ttttattacggagtgggaaaggttgaaggatataaatttaaaactcaatgggaaatatta
caaactcttcctaaatggggattaaaagttaacccttatgtaaaattagtgaaagatata
aaagaagctatcaactatcatcatcatatagaaagaataagagatactttaccttatgaa
atagatggagtggtaataaaggttaatgatctttctctctgggaaaaattaggaactaag
gctcgttcaccaagatatgctcttgcttataaatttcaacctacccaagtaactactcaa
cttttagatgtagtttttcaggtaggaagaacaggtgctattactcctgttgcggtatta
aaacctgttcaaataggtggagttattgttgaaagagcaacccttcataatgaagatttt
attaaaaatttagatattagaataggtgattgggtacttgtccaaagagcaggagaagtt
ataccagaaatagtaatgcctattaaagaaagaagaactggccaagaaaaggaaataata
tttcctactcactgccccatttgtggaacaaaactcattaaaaaaccagaagaagctatt
tggagatgccctaacaaaaattgctatgctcaagcagtaagaaaaattcttcattttgca
agtagaaatgctatgaatatagaagggcttggagagaaagtagcaagagatcttgtagat
agaggtctggttcaaaacgtggcagatctttattatttaaaatgggaagattttatgaaa
cttccaggttttgcttacaaaaaagctaaaaatctttatgaggctatacaaaaaagtaaa
aaaactactttgggaagatttatctatgctcttggaataagacatgtaggagaggctatg
gcacaaatgcttgctgaaaaatttaaaagccttgataaattgatgaatgcttctatgtct
gatttgttaagtatccctggagtaggttatgaagtagctaaatcaatagttgaatttttc
aaaaatgaagaaaatcgcaaaatgattcaaagaatgcttgatgcaggggttacttttgtt
gaagaagaaaaagaagaaaaacctaaaattcttgaggggctaacctttgtctttactgga
accttaaaatctatgaccagagacgaagcaaaagaaatagtaagagagcttggagggaaa
accacagattcagtttctaaaaatgttgactatgttgtagcaggagataatcctggatct
aaatatcaaagagctttacagcttggtgttaaaataattaatgaagaagaatttttaaaa
ttaattggtaaagcaaaataa
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