Thalassolituus oleivorans R6-15: R615_11525
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Entry
R615_11525 CDS
T03056
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tor
Thalassolituus oleivorans R6-15
Pathway
tor03030
DNA replication
tor03410
Base excision repair
tor03420
Nucleotide excision repair
tor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R615_11525 (ligA)
03410 Base excision repair
R615_11525 (ligA)
03420 Nucleotide excision repair
R615_11525 (ligA)
03430 Mismatch repair
R615_11525 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tor03032
]
R615_11525 (ligA)
03400 DNA repair and recombination proteins [BR:
tor03400
]
R615_11525 (ligA)
Enzymes [BR:
tor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
R615_11525 (ligA)
DNA replication proteins [BR:
tor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
R615_11525 (ligA)
DNA repair and recombination proteins [BR:
tor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
R615_11525 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
R615_11525 (ligA)
MMR (mismatch excision repair)
DNA ligase
R615_11525 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
R615_11525 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RNA_pol_A_CTD
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AHK16270
LinkDB
All DBs
Position
complement(2464884..2466989)
Genome browser
AA seq
701 aa
AA seq
DB search
MSQHDLFSDDASASTSTANISATNSAPSEQIIALREQINLHNHRYYVLDEPSIPDAEYDR
LLRELQTLEQENPSLVTPDSPTQRVGAAPLAGFTSVTHERPMLSLDNAMNGEEFIAFDQR
VLDRLKSTDTVEYACEPKLDGLAISLLYEDGLLVRAATRGDGQTGEDVTQNVRTVKNVPL
RLRGDDYPQRIEIRGEVYMLKAGFEAYNERARANDTKLFANPRNAAAGSLRQLDPQITAQ
RPLEFCAYSIGVVSDEATLPNTHADILYKLKEWGVRINEEMRVVQGIAEAEAFFQQLGEK
RHSLAYEIDGTVFKVNDLTLQERLGFVARAPRWAIAYKFPAVEQMTELLGVDFQVGRTGA
LTPVARLQPVHVAGVTVSNATLHNMDEVARLGVRIGDTVIIRRAGDVIPQIVSVVEDRRP
ETTIEITMPETCPVCDSHIEKVEGEAVARCTGGLVCSAQRKEAIKHFASRKALDVEGLGD
KLIDQLVDAGLIDSVDDLFHLTLEQLSGLERMAEKSAQNVLDALETAKKTTLGRFLYALG
IREVGTVTAQNLAAHFGFLERIMNASNEQLLEVADVGGIVAAHVTNFFAEEHNRTVIEQL
QKAGISWEEQEPTKAEDAPLSGQIAVITGTLSDITREQAKTLLERLGVKVTGSVSAKTDF
LVAGEKAGSKLAKAQQLDVTVLDEAAFIEMLAEHGLSVADA
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgagccaacacgatttattttccgacgacgccagcgcgtcgacttctactgctaatatt
tctgcaactaatagcgcaccttccgaacaaataatcgccttacgtgagcaaattaattta
cataatcatcgttattacgttttagatgaaccgagtattcctgatgcggagtacgatcgc
ttattgcgcgaattacaaaccttagagcaagagaatccgagcttagtcacccccgactcg
ccaacacaaagagtaggcgctgctccactcgctggcttcaccagcgtaactcatgaacgc
cctatgttatcgctggataacgccatgaacggcgaagaatttattgcttttgatcaacgc
gttttagatcgtttaaaaagcacggataccgttgaatatgcttgtgaaccaaaacttgat
ggattggccattagtctattgtacgaagacggattattagtgcgtgccgccactcgtggc
gatggtcaaaccggtgaagacgtgactcaaaacgtacgcaccgttaaaaatgtgcctttg
cgtttacgcggtgatgattacccgcaacgcatcgaaattcgtggcgaagtgtatatgctt
aaagcaggctttgaagcttacaacgaacgggcgcgtgcgaacgatactaagttatttgct
aaccctcgcaatgccgcggcaggttcattacgtcagcttgatccgcaaattaccgcacaa
cgcccactcgaattttgcgcgtacagcattggcgttgttagtgacgaagcgaccttaccc
aatacccatgccgatattctgtataaattaaaagaatggggtgttcgtattaacgaagaa
atgcgagtagtgcagggtattgcagaagccgaagccttttttcagcagcttggcgaaaaa
cgtcattcgttagcgtatgaaatcgacggcaccgtatttaaagtaaacgatctaacccta
caggaacgcctaggctttgttgcccgtgcgccacgttgggctattgcttataaattccct
gccgtagagcaaatgaccgaattactgggtgttgattttcaagtagggcgcacgggggca
ttaacgcccgtagcgcgccttcagccagtgcacgtggccggtgttaccgtgagcaatgcc
acattgcacaatatggacgaagtcgcgcgcctaggcgtgcgtattggcgataccgtgatt
attcgtcgtgccggtgatgtgattccacaaattgtatcggtagtggaagatcgtcgccct
gaaaccacgattgaaatcactatgcccgaaacctgccccgtgtgtgattcgcacatcgaa
aaggtagaaggcgaagccgtggcgcgctgtacaggcggcctagtgtgctcagcgcaacgc
aaagaagcgatcaaacacttcgcctcgcgtaaagcattagatgttgaaggcttaggcgat
aaattaattgatcagctagtcgatgccggattaatcgactcagtagatgatttatttcat
ctcacattagagcagttatcaggccttgaacgcatggccgaaaaatccgcacaaaatgta
ttagatgcactcgaaaccgcgaaaaaaaccaccctaggccggtttttatacgcactcggt
attcgtgaagtcggaactgtcaccgctcagaatttagccgcacattttggctttttagaa
cgcatcatgaacgccagcaacgaacagctattagaagttgccgatgtgggcggtatcgtt
gccgctcatgtcaccaacttctttgccgaagaacacaatcgcactgtcatagaacaactg
caaaaagccggaattagctgggaagaacaagagccgacaaaagccgaagatgcgcctctt
agtgggcaaatagcggttatcactggaaccctcagcgacattacccgtgaacaagccaaa
accttactcgaacgcctaggcgtaaaagtaaccggcagcgtatccgccaaaaccgacttt
cttgttgctggcgaaaaagcaggctccaaattagccaaagcccaacagctagacgtcacc
gtattggatgaagctgcgtttattgaaatgctggccgagcatggattgagtgttgctgac
gcttag
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