Treponema pallidum subsp. pallidum Nichols: TP_0634
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Entry
TP_0634 CDS
T00016
Name
(GenBank) DNA ligase (lig)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tpa
Treponema pallidum subsp. pallidum Nichols
Pathway
tpa03030
DNA replication
tpa03410
Base excision repair
tpa03420
Nucleotide excision repair
tpa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tpa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TP_0634
03410 Base excision repair
TP_0634
03420 Nucleotide excision repair
TP_0634
03430 Mismatch repair
TP_0634
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpa03032
]
TP_0634
03400 DNA repair and recombination proteins [BR:
tpa03400
]
TP_0634
Enzymes [BR:
tpa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TP_0634
DNA replication proteins [BR:
tpa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TP_0634
DNA repair and recombination proteins [BR:
tpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TP_0634
NER (nucleotide excision repair)
GGR (global genome repair) factors
TP_0634
MMR (mismatch excision repair)
DNA ligase
TP_0634
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TP_0634
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
BRCT
PTCB-BRCT
DNA_ligase_OB
HHH_2
HHH_5
BRCT_2
DNA_pol_lambd_f
MutS_III
Motif
Other DBs
NCBI-ProteinID:
AAC65609
UniProt:
O83642
LinkDB
All DBs
Position
692381..694852
Genome browser
AA seq
823 aa
AA seq
DB search
MSTAQRRVQELEKLILHHQDRYYNAESDISDDAFDALWEELARLDPGNPLLKAIGSDSQR
DAVKKRHIVPMGSQHKAADEESFSAWAKKNALQAFLVQHKLDGVSLELQYERGHFCCALT
RGNGIVGDDVTANVRGMRGFVPTLTAEWGPCGNLPFTGGVRGEVIMHKDIHRSHYPTHAN
CRNTVNGILKRKDGRGRTHLHIVCYDAVPGTPGKPFTGSLPFADETEKLAWLARQGFVTV
HSHRCANAQEVVALRSEIMRTRELLPYSIDGLVVKSTDLDFQDAQLPRPKKQIAFKFSTQ
EAITTLRDVQWQTSGVTYTPIGITDPVRLAGTTVKRANLCNPNMLTKLCLKIGSHVLISK
RGEIIPKIEALVSTPAHAQEIHIPTQCTSCNTVLENSGSRLFCPNVNCPLLSHHRITRWI
ECLEIKHVGTELIQRLFEEKKVRRIPDLYTLTCEDLIEIEHVGNATAKKILEAIHHKKEI
ALQTFIAGFGIEGIGETMGEKLICAGFDTLEKVLHATTETLESIYQFGTELAKSVVTGIA
RVKDDMCELLDRGFVRILAKQQAESPLRGKSFCFSGSLRNGDRATIHRIRALGGVVRTSV
TRDLSYLIFESLSQPYRTAQKLKKEQGVALEIISEDEFCRLLDQASASCTHTGETVHPLQ
GKSFYFSGASRSMNHKHAQEKVRALGGDVASSVTAQLDYLVFYSQSTRYRTACALGIQII
SEETLHKLIATAQSPLHTDAHVHAPLHGMSFCFSGDLDGMTRAQAIALVQRLGGTVKTAV
STQLTYLVSNDPHGQSRKCQNAVRCGVRIISEHVFLALCTPGT
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgagtactgcgcagagacgtgttcaagaacttgaaaagctcattcttcaccatcaagac
cgctactacaacgcggagtctgatatttcagatgacgcctttgacgcgctttgggaagaa
cttgcaaggcttgatcctggaaatccgctgcttaaagcaatcggttctgacagtcaacgt
gacgcagtgaaaaagcgccacattgttcctatgggtagtcaacacaaagctgcagacgag
gagtccttcagcgcatgggcaaaaaaaaatgcattgcaggcatttctcgtccaacacaaa
ctcgatggcgttagcttagagttgcaatacgagcgcggtcatttttgctgtgcgctcacc
cgtggtaacggcattgtcggagacgacgtcactgctaacgtacgcggcatgcgtggcttt
gtgccgaccctcactgcagagtggggaccttgcggcaatctccccttcacggggggtgtt
cgtggcgaagtcattatgcacaaggatatacatcgttcccactatcctactcacgcaaat
tgccgcaacaccgtaaacggcatcctaaagcgaaaggacggccgcggccgcacccacctc
catattgtttgttacgacgcagtacccggcacccccggtaaaccgttcaccggctccctc
ccctttgctgatgaaacagaaaagcttgcctggctcgcgcgccaaggtttcgtgacggta
cattcgcatcgctgcgctaacgcacaggaagttgttgcactccgatctgagattatgcgc
acgcgcgagctgttgccttacagcatcgatggcctggtagtaaagagtaccgatcttgac
ttccaggacgcacaacttcccagacctaaaaagcagatagcctttaagttcagtacacag
gaggcgataaccaccttgcgtgacgttcaatggcaaacatcaggagtgacgtacacgccc
attggtattaccgatccagtgcgccttgcaggaactacggtcaagcgcgcaaatttatgt
aacccgaatatgctcacaaagctgtgtctcaaaattggcagccacgttttaatttccaaa
cggggggagattatcccaaaaattgaagcactcgtttcaaccccagcacatgcgcaggaa
atccacataccgacacagtgtaccagttgcaacacagtgctggaaaacagtgggagcagg
cttttttgtcctaatgtaaactgccccctgctctcgcatcaccgcattacacggtggatt
gagtgtttggagatcaagcatgtggggaccgaactcattcagcgtctttttgaagaaaaa
aaggtacgccgcatcccggacctctacacgctcacctgcgaggatctcattgagattgag
cacgtcggcaatgcaactgcaaaaaaaatactcgaagctatacaccacaaaaaagaaata
gcgttgcaaacgtttattgccgggtttggcatcgaggggatcggagaaaccatgggagaa
aaacttatctgtgccggttttgacacacttgaaaaagtgctccacgcaacaacggagaca
ctcgagtccatctatcagtttggaacagaacttgcaaaaagcgtggtaaccggtattgca
cgggttaaggatgatatgtgtgaactgcttgatagaggcttcgtgcgcattcttgccaag
cagcaggcagagtcgccactccggggaaaaagcttttgcttctcaggctccctcagaaat
ggagatcgcgcgactatacaccgtatacgcgcgctcggaggcgttgtgagaacgtcagtt
actcgagacctttcgtacctaatattcgaaagcctatcacagccctatcgcaccgcgcaa
aaactaaaaaaagaacagggggtagcgctagaaattatttcggaagacgagttttgcagg
cttctagatcaagcttccgcatcctgtacccatacgggggaaaccgtacaccccttgcaa
ggaaagagtttttatttctcaggtgcgtcgcgcagtatgaatcacaaacatgctcaagaa
aaagtgcgcgcgttaggaggggatgtcgcatcgtccgtaacagcccagcttgactatctg
gtgttttacagtcagtcgacacgttatcgcaccgcatgcgcgttgggaatccaaattatt
tcggaagagacgctccacaagcttattgccactgcccaatcgcctttgcatacggatgca
cacgtgcacgcgccattgcacggcatgagcttctgcttctctggcgatctcgacggtatg
acacgcgcccaggcaatcgcgctcgtacaacgcctaggcggaacagtgaaaacggctgtc
agtacacagctgacgtatctggtgtcaaacgatccacatgggcagtcacgcaaatgccag
aacgctgttcggtgtggcgtgcgtattatcagtgagcacgtctttctcgctctgtgcacc
ccggggacctaa
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