Tenacibaculum pacificus: PG913_04850
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Entry
PG913_04850 CDS
T08859
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tpac
Tenacibaculum pacificus
Pathway
tpac03030
DNA replication
tpac03410
Base excision repair
tpac03420
Nucleotide excision repair
tpac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tpac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PG913_04850 (ligA)
03410 Base excision repair
PG913_04850 (ligA)
03420 Nucleotide excision repair
PG913_04850 (ligA)
03430 Mismatch repair
PG913_04850 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpac03032
]
PG913_04850 (ligA)
03400 DNA repair and recombination proteins [BR:
tpac03400
]
PG913_04850 (ligA)
Enzymes [BR:
tpac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PG913_04850 (ligA)
DNA replication proteins [BR:
tpac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PG913_04850 (ligA)
DNA repair and recombination proteins [BR:
tpac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PG913_04850 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PG913_04850 (ligA)
MMR (mismatch excision repair)
DNA ligase
PG913_04850 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PG913_04850 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
AphA_like
HHH
HHH_3
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
WBX74522
LinkDB
All DBs
Position
1058345..1060342
Genome browser
AA seq
665 aa
AA seq
DB search
MTIQQNIQALREELNQHNYNYYVLDNATISDYDFDIKLKELTQLETENPQFFDANSPTQR
VGGEITKNFETITHKNRMYSLDNSYSKDDLLDWEKRIQKMLGVDDIEYTCELKYDGASIN
LTFENGKFIKAVTRGDGFQGDEVTANIRTIKSIPLSVSSDFVSNFEMRGEIILPIDGFNK
MNEDRLENGEEAYKNPRNTASGSLKLQDSAEVAKRPLDCLLYQVVTDERKYKTHFENLEI
ARNVGFKVPDTIALTKTIDAVFNFVNHWDIKRHDLPYETDGVVIKVNNLQQQEELGYTSK
APRWAIAYKFKAEQVSTVLNEITYQVGRTGAITPVANLEPVQLARTIVKRASLHNADQIE
KLDIRINDTVFVEKGGEIIPKIIAVDLTKRLDTSEPTKYATNCPECDTELVRSEGDAKHY
CPNEFGCAPQITGRIQHFISRKAMDIDGLGGETVDLLRKEGLIQNYADLYDLTAEQVIPL
ERMAEKSAQNMIAGIEKSKEIPFEKVLFALGIRFVGETVAKKLAKHFKSIDKLMTADLET
LISVDEIGDRIAESIIEFSNDLGNIQLINRLKLHGVQLEVSAESLENQTDKLAGKVFVVS
GVFHQMSRNELKKAIEDNGGKVSSSISKKTSFIVAGDNMGPSKLTKAKSLEIPILSEQNF
IDMLI
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgacaattcaacaaaatatacaagcgcttcgagaagaactgaatcaacacaattataat
tattatgtgttagataatgccactatttcagattatgattttgatataaaactgaaagaa
ttaacacaattagaaactgaaaatccacaatttttcgatgccaattcaccaacacaaaga
gttggaggagaaattacgaaaaattttgaaacgattactcataaaaatcgcatgtattct
ttagataattcatattctaaagacgatttattagattgggaaaagcgtattcaaaaaatg
ctaggagttgatgatattgaatatacttgtgagttaaaatatgatggagcatctatcaat
ttaacttttgaaaatggtaaatttataaaggctgtaactcgtggagatggttttcaagga
gatgaggtaactgctaatattcgtactataaaatcaattcctttaagtgtttcttctgat
tttgttagtaattttgaaatgcgaggtgaaattattttaccaattgatggattcaataaa
atgaatgaagatagacttgaaaatggagaagaagcttataaaaacccaagaaatacagca
agtggaagtttaaaattacaagatagtgctgaggttgcaaagcgtcctttagattgtttg
ttatatcaagtcgttactgatgaacgtaagtataaaactcattttgaaaacttagaaatt
gcgcgtaatgttggttttaaagttcctgatactattgctttaacaaaaacaattgatgct
gttttcaattttgtaaatcattgggatattaaacgacatgatttgccttacgaaactgat
ggagttgttatcaaagttaataatttacagcaacaagaagaattaggttacacatcaaaa
gcgccacgttgggcaatagcttataaatttaaggctgaacaagtttcaacagttttaaat
gaaattacttatcaggttgggcgaacaggagcgattacgccagtagcaaatttagagcct
gtacaattggcaagaactatcgtaaaacgtgcttcattacataatgcagatcaaatagaa
aagctagatatcagaataaatgatactgtttttgtagaaaaaggaggtgagattattcct
aaaattatagcagttgatttaactaaaagactagatacttctgagcctacaaaatatgca
accaattgtcctgaatgtgatactgaattggtaaggagtgaaggagatgcaaagcattat
tgcccgaatgaatttggatgtgcaccacaaattacaggaagaatccagcattttatcagt
agaaaagctatggatattgatggtttaggcggtgaaactgtagatttattacgtaaagaa
ggtttgattcaaaattatgccgatttatatgatttgacagcggaacaagttattccctta
gaaagaatggcagaaaaatctgcacaaaatatgattgcaggaattgagaaatcaaaagaa
attccgtttgaaaaagtattgtttgctttaggaattcgatttgttggtgaaacggtagct
aaaaagttagcaaaacattttaaatctattgataaattaatgactgccgatttagaaact
ttaatttctgtagatgaaattggagatagaattgcagaaagtattattgagttttctaat
gatttagggaatattcaattgataaatagattaaaattacacggagtacaattagaagtt
tctgccgaaagtttagaaaatcaaacagataaattagcagggaaagtatttgtagtttct
ggtgtttttcatcaaatgagtagaaacgaacttaaaaaagcaattgaagataatggcgga
aaagtaagttcatcaatatctaaaaaaacaagttttattgttgcgggtgataatatggga
cctagtaaattaacaaaagctaaaagtttagaaataccaattctttctgaacaaaatttt
attgatatgcttatttag
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