Tympanuchus pallidicinctus (lesser prairie-chicken): 128071922
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Entry
128071922 CDS
T08967
Symbol
SETDB1
Name
(RefSeq) histone-lysine N-methyltransferase SETDB1 isoform X1
KO
K11421
[histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase [EC:
2.1.1.366
]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai00310
Lysine degradation
tpai01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
128071922 (SETDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tpai03036
]
128071922 (SETDB1)
Enzymes [BR:
tpai01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.366 [histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase
128071922 (SETDB1)
Chromosome and associated proteins [BR:
tpai03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
128071922 (SETDB1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
128071922 (SETDB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF5604
Tudor_4
Tudor_5
SET
MBD
Pre-SET
Chromo_MORC2_6th
DUF4537
Motif
Other DBs
NCBI-GeneID:
128071922
NCBI-ProteinID:
XP_052521073
LinkDB
All DBs
Position
Unknown
AA seq
1278 aa
AA seq
DB search
MDCQDIKELQKEVMEEMGISMEELEDIINKELEKSEYVKQKKQQLEELEVCVKQKEEEVA
HVDRLFDDAWRDFHKCEMLVKDLYSKLGLDYRESSSEEEDLAAKPTEVIEIPDDDDDDIM
SIDSGWKNSDSSPKVPKDQTLLREAMAAMRRSAQDVQKFMDAVHRRTNAQEAVRDAQTPQ
QAPGALHSAGPAVGVGDLSNDGDLKVGMRILGKKRTKTWHKGTLIAIQTVGAGKKYKVKF
DNKGKSLLSGNHIAYDYHPSPDKHYVGSRVVAKYKDGDQVWLYAGIVAETPNVKNKDRFL
IFFDDGYASYVKEWELYPVCRPLKKTWEDIEDVSCRDFIEEYISAYPNRPMVLLKSGQLI
KTEWEGTWWKSRVEEVDSSLVKILFLEALAVDAVSVAFSLLQDDKRCEWIYRGSTRLEPM
FSMKTSTASTQEKKQGGQARTRPNVGAVRSKGPVVQYTQDLTGAGTQYKPLEQMQAASLA
VQPPSPPPSEMECPDGLLAQSRKQVAKKSTSFRPGSGQSSPSPPVLNDAPGRAAAAQQHR
SFPSGPAASAQPFHGMLDRVPNEPSYRAPLEKLFYLPHVCSYACLSRVRPLRSDQYRSRN
PLLIPLLYDFRRMTARRRVNRKMGFHVIYKTPCGLCLRSMAEIERYLFETDCDFLFLEMF
CLDPYVLVDRKFQPYKPYYYIADITRGREDVPLSCVNEIDGTPPPQVAYSKERIPGKGVF
INTGWEFLVGCDCRDGCRDKSKCACHQLTVQATGCTPGGQINPNSGYQHKRLEECLPTGV
YECNKRCKCNVNMCTNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSFVCIYAGKILT
DDFADKEGLEMGDEYFANLDHIESVENFKEGYESDAKCSSDSSGVDLKDDEEDNTGTEEQ
EESNEDSSDDNFCKDEGFNASSVWRSYATRRQTRGQKENGLSETASKDSGLTPQVGHDEA
AAAASCKLPVSEETSKNKVASWLSSNSVSDSFQDNDSTSSFKMSEGGEAKGCRADAAPGG
AEGEAKAPRKDEPEDSSKVPGLSDLGRLYGYNPSPPKLEGLRRPTSKTALLQSRRHSGPL
QPPAEDVLTLSSSTDSDGDNGPKVEGQPQGAANDSDDIQTISSGSEEEEGDEKKNPCGSG
PMKRQVAVKSTRGFALKSTHGIAIKSTNMAAAEKGDSAPVCRTTRQFYDGEESCYIIDAK
LEGNLGRYLNHSCSPNLFVQNVFVDTHDLRFPWVAFFASKRIRAGTELTWDYNYEVGSVE
GKELLCCCGAIECRGRLL
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atggattgccaggacatcaaagagctgcaaaaagaagtgatggaggagatgggaatctcc
atggaggagctggaggacatcatcaacaaggagctggagaagtctgagtacgtgaagcag
aagaagcagcagctggaggagctggaggtgtgcgtgaagcagaaggaagaggaggtggcg
cacgtcgatcgcctcttcgatgatgcttggagagactttcacaaatgtgagatgttggtg
aaggatctgtactccaaactgggcctggattaccgtgagagcagctctgaggaggaggac
ttggctgccaaacccacagaagtgattgagatcccagatgacgacgacgacgacatcatg
agtattgattcgggctggaagaacagcgatagcagtcccaaggttcccaaggatcagacc
ctgctgagggaagccatggcagcaatgaggaggtcggcccaggacgttcagaagtttatg
gatgctgtgcacaggagaacaaacgcccaggaggcagtgagagatgcacaaacccctcag
caggcgcctggtgctctgcactctgctggaccggccgtgggggtgggcgacctcagcaac
gatggcgatctgaaggtgggcatgaggatcctgggcaagaagagaaccaaaacgtggcac
aaagggactctgatcgccatccagacggtcggtgctgggaagaagtacaaagtgaagttc
gacaacaagggcaagagtttgctgtctggcaatcacattgcttacgactatcacccctcc
ccggacaaacactacgttgggagcagagttgtggcaaaatacaaagatggggatcaggtc
tggctgtatgctggcatcgtggctgaaacgccaaacgtgaagaacaaagacaggttcttg
atcttctttgacgatggctacgcttcgtacgtcaaggagtgggagctgtacccagtctgc
aggccgcttaagaagacttgggaggacatagaggacgtgtcgtgccgggacttcatcgag
gagtacatcagtgcctaccccaaccgccccatggtgctgctgaagagcggccagctgatc
aaaaccgagtgggaggggacctggtggaaatccagggtggaggaggtggacagcagtctg
gtcaaaatcctcttcctggaagctcttgctgtagatgctgtgagtgttgcgttctccttg
ctgcaggatgacaaacgctgcgagtggatttaccgcggatccacgcgcctcgagcccatg
ttcagcatgaaaacctccactgcctccacccaggaaaagaagcagggtgggcaggcgagg
actcggcccaatgttggcgctgtgcggagcaaaggccccgtggtgcagtacacacaggat
ctgactggagctgggacgcagtacaaacccctggagcagatgcaggcggcctcgctggca
gtgcagcccccctccccgccgccctctgagatggagtgccctgacggcctgctggcccag
tcgaggaagcaggtggccaagaagagcacatccttccggcccggctcggggcagtcgtcg
ccttcgccgcccgtgctgaacgacgcgccaggaagggcggctgcagcccagcagcatcgc
agcttcccctccgggccggccgcctcggcgcagcccttccacgggatgctggaccgggtg
cccaacgagccgtcgtaccgcgcgccgctggagaagctcttctacctcccccacgtctgc
agctacgcctgcctgtcccgcgtgcggcccctgcgcagcgaccagtaccgcagccgcaac
ccgctgctcatccccctgctctacgacttcaggaggatgacggcgcgccgcagggtgaac
cgcaagatgggcttccatgtcatctacaagacgccgtgcgggctctgcctgcgcagcatg
gccgagatcgagcgctacctcttcgagaccgactgcgacttcctgttcctggagatgttc
tgcctggatccctacgtcctggtggaccgcaaattccagccctacaagccctactattac
atcgccgacatcaccaggggccgcgaggacgtgccgctgtcctgcgtcaacgagatcgac
ggcacgccgccgccgcaggtggcctacagcaaggagcgcatccccggcaagggggtcttc
atcaacacgggctgggagttcctggtgggctgcgactgcagggacggctgcagggacaaa
tccaagtgtgcctgtcaccagctgacggtccaagcaaccggctgcaccccgggggggcag
atcaaccccaactcggggtaccagcacaagaggctggaggagtgcctcccaactggggtt
tatgagtgtaacaagaggtgcaaatgcaacgtcaacatgtgcaccaaccgcctggtccag
cacgggctgcaggtcaggctgcagctgttcaagactcagaacaagggctggggcatccgc
tgcctcgatgacatcgccaagggctccttcgtctgcatctacgcagggaaaatcctcacg
gatgactttgccgacaaagagggcttggagatgggggacgagtactttgcaaacctggat
cacatcgagagcgtggagaacttcaaggagggctacgagagcgacgccaagtgctcgtct
gacagcagcggggtggacctgaaggacgacgaggaggacaacacgggcacggaggagcag
gaggagtccaacgaggacagctctgatgacaacttctgcaaggacgagggcttcaatgcc
agctcggtgtggcgcagctacgccacgaggcgacaaacccgcgggcagaaggagaacggc
ctctcagaaacggcctccaaggactcggggctcacgccgcaggtcggccacgatgaggct
gcggcagccgcctcctgcaagctgcccgtgtccgaggagacctccaagaacaaggtggcc
tcgtggctcagctccaacagcgtgtctgacagcttccaggacaacgacagcacctcgtcc
ttcaagatgagcgaaggaggggaggccaaaggctgcagggctgatgctgccccggggggc
gcggagggagaggcgaaggcgccgaggaaggatgaacctgaagattcaagcaaagtcccg
gggctcagcgacctgggcaggctgtatggctacaaccccagcccccccaaactggagggg
ctgcgcagacccaccagcaaaacggctctgctgcagagcaggcggcactcggggcccctg
cagccccccgccgaggacgtgctgaccctgtccagcagcaccgacagcgatggggacaac
gggcccaaggtggaggggcagccccagggcgctgccaacgacagcgacgacatccagacc
atttcatcgggctctgaggaggaggaaggggatgagaagaagaacccctgcggttcaggg
cccatgaagaggcaggtggccgtgaaatccacgcggggcttcgccctgaaatccacccac
ggcatcgccatcaaatccaccaacatggcggcagccgagaagggcgacagcgctccggtc
tgcaggacgacgcggcagttctacgatggagaggagtcctgctacatcattgatgccaaa
ctggaggggaacctgggccgctacctcaaccacagctgcagtcccaacctcttcgtgcag
aacgtttttgtggacacccacgacctgcgcttcccctgggtcgccttcttcgccagcaag
aggatccgggcgggcacggagctgacgtgggattacaactacgaggtgggcagcgtggag
ggcaaggagctgctgtgctgctgcggggccatcgagtgcagggggcggctgctctga
DBGET
integrated database retrieval system
