Tympanuchus pallidicinctus (lesser prairie-chicken): 128084644
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Entry
128084644 CDS
T08967
Symbol
KDM2B
Name
(RefSeq) LOW QUALITY PROTEIN: lysine-specific demethylase 2B
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
128084644 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tpai03000
]
128084644 (KDM2B)
04121 Ubiquitin system [BR:
tpai04121
]
128084644 (KDM2B)
03036 Chromosome and associated proteins [BR:
tpai03036
]
128084644 (KDM2B)
Enzymes [BR:
tpai01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
128084644 (KDM2B)
Transcription factors [BR:
tpai03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
128084644 (KDM2B)
Ubiquitin system [BR:
tpai04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
128084644 (KDM2B)
Chromosome and associated proteins [BR:
tpai03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
128084644 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
128084644 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
LRR_4
Motif
Other DBs
NCBI-GeneID:
128084644
NCBI-ProteinID:
XP_052546889
LinkDB
All DBs
Position
Unknown
AA seq
1265 aa
AA seq
DB search
MKLSEKMKAEKDSGRRLRPIGRRRYDEHEDLSDVEEIVSVRSFNLEEKLKSKTYRGDFVH
SMDGKDFTFEYVQREALRVPLIFRNKDGLGIKMPDPDFTVRDVKLLVGSRRIVDVMDVNT
QRGVEMSMSQFVRYYETPEAQREKLYNVISLEFSHTKLENIVKRPNVVDLVDWVDNMWPQ
HLKERQTDATNAISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIP
PTLQNLELYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVF
GGNILHSFNVPMQLRIYEIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQ
KESMLIDAKRKRSIDSYSSDSWLDMDEESCDAHIREEKDDSLDKNSKSLVDGSSSPNSTH
SEGKEGAGRKQKATVMRYLKRTLSNESDDSAKSTTPTDYPKTPTGSPATEVSTKWTHLTE
FELKGLKALVEKLESLPENKKCVPEGIEDPQALLEDMKNILKEHADDDQNLAISGVPVVS
WPKKTPKNRAVGRPKGKLGAASAVKLAANRSTAGARRRRTRCRKCEACLRTECGECHFCK
DMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSIC
NEIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKEQ
KMNRDNKEVTDAAKRKGDCEETPRRKSEEHSKKPQVDSILRRKSDEVHLRRKRKFEKPQE
PSMRKRLKLGKEXKLFRKKRRSWKASDERSALLKPLRRLKQEPEDELPEAPPRSKDSDQS
RSSSPTAGPSTEGAEPRDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANENHQ
PIKSEPESENEEPKRALNNSERLHRFSKGLNGTPRELRHPLIPSLRSTPRGIARPPPSLS
PPKCIQMERHVIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRVCKT
WNRWCCDKRLWTKIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGL
RDLLLSGCSWIAVSALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGQIDNRSK
LRNIVELRLAGLDITDASLRLIIRHMPLLSKLNLSYCNHVTDQSINLLTAVGTTTRDSLT
EINLSDCNKVTDQCLSYFKRCGNICQIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKL
LQKLS
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atgaaactctccgaaaaaatgaaggcggagaaggattctggaagaagattgcggcccatt
ggtaggaggaggtacgatgagcacgaggacctctcggacgtggaggaaatcgtcagcgtc
aggagtttcaatctcgaggagaaattaaagagcaaaacgtatcgcggggatttcgtgcac
tctatggatgggaaagattttacttttgaatatgtgcaaagagaagctctcagagttcca
cttatcttcagaaataaggatggactgggaattaaaatgcctgacccggatttcaccgtc
agagatgtgaagctattagtgggaagtcgtcgaatagtggatgtgatggatgtgaacacg
caaagaggtgttgaaatgagcatgtcccagtttgtgagatactatgaaacgccagaggcc
cagcgtgaaaaactctacaatgtcatcagcttggagttcagtcatacaaagctggagaac
attgtcaagcgtcccaatgtggtggacttagtcgactgggtggataatatgtggccacag
catttgaaggagagacagacagatgctaccaatgctatttcagagatgaaatacccaaaa
gtgaagaagtactgtttgatgagtgtgaaaggatgcttcactgatttccatattgatttt
ggaggcacttcagtgtggtatcacgttttccgtggggggaagatcttctggctgattccg
cctactctgcagaatctagaactttatgaagaatgggttctctcaggaaagcaaagtgat
atctttctgggagacagggtggaacgatgccaaagaattgaactgaaacaaggctataca
ttcttcattccttcagggtggatacatgcggtttatactccagtagattctctggtgttt
ggtggaaatatcctgcatagctttaatgttcccatgcagcttcgcatctatgaaattgag
gacagaacaagggtgcatgccaaattccgttatcctttctactatgaaatgtgctggtat
gttctggagagatacgtgtcctgtgtgacccagcgctgccacctcagcaaagagtaccag
aaagaatcaatgttaattgatgcaaagagaaaacgcagcatagacagctattcatcagat
tcgtggttagacatggatgaagaatcttgtgatgctcatatccgggaggaaaaggatgac
agcctggataagaactccaaatccctggtggatggctcctcctcacccaacagcacacat
tcagaaggaaaagagggtgcggggagaaaacaaaaagccacagtaatgaggtacctaaaa
agaactttgtctaatgagtcagatgacagtgcaaaatcaacgacccccacggattatccc
aaaacaccaacggggtctccagctacagaagtttcaaccaaatggactcatctcacagaa
tttgaactgaagggtttgaaagccctggtggaaaagcttgaatctctcccagagaacaag
aagtgtgttccagaaggcattgaagatccgcaggctctcctggaggacatgaagaacatt
ctgaaagaacatgctgatgatgaccaaaatcttgcgatttcgggtgtccctgtggtcagc
tggcccaagaagaccccaaagaacagggcggtcggacggcccaaagggaagctgggcgct
gcctctgcggtgaagctcgcagctaaccggagcacggccggggcgcgccgcaggaggacg
cgatgccgcaagtgcgaggcgtgcctgcggacagagtgtggcgagtgtcacttctgcaaa
gacatgaagaagtttggggggcctggcaggatgaaacagtcctgcattatgaggcagtgt
atcgcaccggtgttgcctcatactgctgtatgtctggtgtgtggagaagctgggaaagag
gacactgtggaagaggaggagagcaagtttaatctcatgctaatggaatgctccatttgt
aatgaaataatacacccaggatgccttaaggtgaaggaatcagatggtgtggttaacgac
gagctgccgaactgctgggagtgtccaaagtgcaaccatgcagggaaaactggaaaacaa
aagcgcggaccaggattcaaatacgcatcaaatctcccaggctcattgctgaaggaacag
aaaatgaacagagacaataaggaagtaacagatgctgcaaaacggaaaggggactgtgaa
gaaactcccaggcggaaatctgaggaacattccaaaaagcctcaagttgactcaattctg
aggagaaagtcagacgaagtacatctgcggaggaaaaggaaatttgagaaaccccaggaa
ccctctatgagaaaacggctaaaacttggaaaagaanngaaactcttcaggaagaagcgg
cgatcgtggaaggcttcggatgagcggagcgccctgctcaaacccctgcggcgcctcaag
caggagccagaggacgagctgccggaagcgcctccccgctccaaggacagcgaccagtcg
cgatccagctcgcccaccgcgggtcccagcacagagggggccgagcccagggacaagaag
aagttcaagatgaggcggaaaaggcggcttcccaataaagaactgagcaaggagctcagc
aaggagctcaaccaagagatccaaaaaaccgagaacagccttgccaatgagaatcaccaa
cccatcaaatctgaacccgagagcgaaaacgaggaacccaagcgcgccttgaacaacagt
gagagactccataggttcagcaaagggttgaacgggactccccgggagctgaggcacccg
ctcatccccagcctgcggagcacaccgcgcggcatcgcccggcccccgccctcgctctct
cctcccaaatgcattcagatggagcggcacgtcatccggccgccccccatcagcccccct
ccggactcgctccccctggatgatggggcagcccacgtgatgcagagggaagtctggatg
gctgtctttagctacctcagtcatagagacttgtgcatctgtatgagagtttgcaagacc
tggaacagatggtgctgtgacaaaagattatggaccaaaatagatttaaaccattgtaaa
tccatcactccacttatgcttagtggcattattaggagacagcctgtaacccttgatctt
agctggacaaatatatctaaaaagcagctgagctggcttatcaacagactgccaggtctc
cgagacctgctgttatcagggtgctcatggatagcagtgtcagcactttgtagttccagc
tgccctttactccgaactctggacgtgcagtgggcagaaggactgaaggacgctcagatg
agagacctcctgtcaccgcccacagacaaccggccaggtcagatcgacaaccggagtaaa
ctgcggaacatcgtggagctgcgcttggccggcctggacatcaccgacgcgtctttgcgg
ctgatcatcaggcacatgcctctgctctccaaactcaatcttagttactgtaaccacgtg
acagatcagtctattaacctgctgaccgcggttggaactaccacgcgggattcattaacg
gaaattaatttatcagactgcaataaggtgactgaccagtgcctgtcctacttcaaacgt
tgtggaaacatctgccagatcgacttgaggtactgcaagcaagtgacaaaagaaggctgt
gagcagttcatagcagagatgtcagtaagtgttcagtttgggcaagtggaagaaaaactt
ctgcaaaaactgagttag
DBGET
integrated database retrieval system
