Tympanuchus pallidicinctus (lesser prairie-chicken): 128089158
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Entry
128089158 CDS
T08967
Symbol
BRCA1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03440
Homologous recombination
tpai03460
Fanconi anemia pathway
tpai04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
128089158 (BRCA1)
09124 Replication and repair
03440 Homologous recombination
128089158 (BRCA1)
03460 Fanconi anemia pathway
128089158 (BRCA1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tpai01009
]
128089158 (BRCA1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tpai04121
]
128089158 (BRCA1)
03036 Chromosome and associated proteins [BR:
tpai03036
]
128089158 (BRCA1)
03400 DNA repair and recombination proteins [BR:
tpai03400
]
128089158 (BRCA1)
Enzymes [BR:
tpai01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128089158 (BRCA1)
Protein phosphatases and associated proteins [BR:
tpai01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
128089158 (BRCA1)
Ubiquitin system [BR:
tpai04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
128089158 (BRCA1)
Multi subunit type E3
BRCC complex
128089158 (BRCA1)
Chromosome and associated proteins [BR:
tpai03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
128089158 (BRCA1)
DNA repair and recombination proteins [BR:
tpai03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
128089158 (BRCA1)
BRCA1-A complex
128089158 (BRCA1)
BRCA1-B complex
128089158 (BRCA1)
BRCA1-C complex
128089158 (BRCA1)
BRCA complex
128089158 (BRCA1)
FA (Fanconi anemia) pathway
Downstream FA components
128089158 (BRCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT_assoc
BRCT
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_4
BRCT_2
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-RING_6
zf-Nse
BRCT_3
zf-RING_5
RING_XB3-XBAT31
zf-RING_10
zf-MIZ
RTT107_BRCT_5
Zf_2nd_IFT121
Motif
Other DBs
NCBI-GeneID:
128089158
NCBI-ProteinID:
XP_052556246
LinkDB
All DBs
Position
Unknown
AA seq
1744 aa
AA seq
DB search
MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHIFCRFCMFKLLSKKKKGVI
QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSHFPKTSTEAASAELL
GNNRSVIQSKGFRNRKISAKENGQDSYTLQEANVDPQLTDNRVEERYLTRKKQKRGIGRG
VLIELGTDSSEELFMLASDTGRLEDKEELEEFKSAEKYGSSCNTQSLKLGAEEITLPDII
GETDFLKEALSKKSMLNITEHVKSNRVNTIEGQSSPSNVFDADLLTEQCDGIGNASPLKN
NHTSFSNNAEEMDAEESLCSSKNQELDFEDGSESTLDKIKEKHICVPSVEDVEMYEPVNE
SLLEKELPVEKLLQPKIPHCPTLHEVSRKRLKQSIQKVNEWFSKSNETLSSSSFQNDPSE
ATDASGEGDISLSDKDSCISEKTNPVVDSVEFVVFERSKRWPKQTTYSIKDKIFGKTYER
GRKSNPSIILRDVLPAAKKEDAAAEEECLNNSREDRLKRKREPARVLQPEDFIEKKDLEE
ADRCPQGINSSLEGAEKRKCDGNSAVKENPLLEKIKVRMLTEFEEGGKNAIEKVSGMPFD
GQLELSNSDQKSTKNACSAAKGCRRSTRTRCAIRLVVDRNPDSFGPDEPLIDSYPSSEEP
NKVDCEQRQVRRSRRLQLLSKETGKMRITKEARNSDSGPEGSVFGVERNVLVHNSQCKDL
RKQQDILNCTSLTDRNGADLVANGIQISLKNSADITKNRSLFNPTFSCQHSNFNSPSLKA
GSQEGEMLGRLFLLQSPSKTVLDTASILTEEKRSGSWTVFPQDKRCCSQNVPEDFRIEKS
PMAKNVSELTVEAEDSELDMQHLRNTFRSSKRQSFSLYPAPMKTCTTDDVEAEKLNTLCP
DQVEKRPSKYFMTENLQEKKTTAENLSSVCEKFKTCESACVSPVSCSVSNAECVHAVEHQ
EDILNVANHGSLTTLVRMCATRNEGRNRPQEGEQESEKTLSADIGVESKLRLSPVGSKRN
LSDRSNAEEHAFQRTDLNTVSETYFSSESNQVENAEVVDGKAPMQLFQPSPMVCPTASQQ
NPAEFNCRVTEKKISKKEGSLVKGNEERLIQTVSTGLSEYLVGEALEESLKVHSDFTDLS
ETPDGLLCSDNDTEDSASFYVTNRKDTSAVFVKRSSAALVNIVNDSVVSCKPRSEGIQRS
QRRAQKLQSSDEESSEDEDLPCFQELMFGKSVSTPLQIKKQVTSVVQSSANPSMLPRSEC
LNENNEQKTLEAALSNECVSPNQESECSVKLFSSQSNISEESVDGAQELRKTLTQVSDVN
KSKEALQSCSGGLKRRKDDSNDEYQEDPNMGANLGEASGYDSETSRVEDSHEPFSQDEIL
STQQKNAMQNNLKKLQEEMAVLEAVLKQHASQDTEVLPLCREVPYSGSGGTLGVEQMRQE
TENASEHDSETKLSKAPVLSVLCRNVTSNPNSSSSSVKHPCPQTAQTTNNSAVAQCDNKS
SVRVRESKRNVCFPTSVLHNAAGKENAASSDTTYRTEMSIVASGLNQSEHLMVQKFARKT
QSTFSNHITDGTTHVIMKTDEELVCERTLKYFLGIAGRKWVVSYQWIIQSFKEGRILDEE
NFEVKGDVINGRNHQGPKRARQSLAEKIFKDFEICCYGPFTDMTAGHLEWIVELCGASVV
KQLHLFTHKVNSTAVVVVQPDAWMEGTSYEAIQQKNNVAVVTREWVLDSVACFECQELDA
YLVS
NT seq
5235 nt
NT seq
+upstream
nt +downstream
nt
atggacttgtcagtgattgccattggggatgtgcaaaatgtgctttcagccatgcagaag
aacttggagtgtccagtctgtttggatgtgataaaagagccagtctcaacaaaatgtgat
cacatattctgcaggttttgcatgtttaaactcctcagcaaaaagaaaaagggtgtaata
cagtgtcctctgtgtaagactgaagttaccaagagaagtctcaaagaaaattccagattt
aagcagctgattgaaggattgttagaagctatcagtgcatttgagcttgacactggagta
aaatttttaagcagtcattttcctaaaacgtccacagaagctgctagtgccgagctcctg
ggtaataaccgttctgtcatccagagtaagggtttcagaaacaggaaaatatctgctaaa
gaaaatggacaagacagctataccttgcaggaagctaatgtggatccacagcttacagat
aacagggtcgaagagcgttacctaacacgcaaaaaacagaagcgtggcattggaagaggt
gtacttatagagcttggcactgattcctctgaagagctttttatgctggcaagcgatact
ggcaggttagaagacaaagaagagctagaagaatttaagagtgctgagaagtatggaagt
tcttgcaatacacagtcactcaagctgggtgctgaagaaataactttaccagatatcata
ggtgaaactgatttcttgaaggaagctttgagcaagaaaagcatgctgaacatcactgaa
catgtcaaatctaaccgcgtaaatacaattgagggtcagagttctccttcaaatgttttt
gatgcagacctactcacagagcagtgtgatggaataggtaatgctagtcccttaaagaat
aatcacacatctttctctaataatgcagaagaaatggatgcagaggagtctctgtgcagt
agtaaaaaccaagagcttgactttgaagatggctcagaaagtactctggataaaataaaa
gagaagcatatttgtgtgccaagtgtggaagatgtagaaatgtatgaacccgtgaatgag
tctttacttgaaaaagaacttcctgtggagaaactgcttcagccgaagatacctcactgt
cctaccctgcatgaggtctctagaaagagactgaagcaaagcattcagaaagtcaatgaa
tggttttcaaaaagcaatgagactctatcttccagttcattccagaatgatccttctgaa
gcaactgatgcttcaggtgaaggagatatttctctatcagataaagattcatgtatttca
gagaagaccaaccctgtagtagattctgtggaatttgtagtgtttgaaagaagcaagaga
tggccaaaacaaacaacatatagcatcaaagacaaaatatttgggaaaacatatgagaga
gggaggaaatcaaatccctctattattttgagagacgttttgcctgctgcaaaaaaagaa
gatgcggctgctgaagaggagtgcttgaataattccagagaagacagactaaaacgaaaa
agggagcctgcccgtgtccttcagcctgaagacttcattgagaagaaagatctagaagag
gcagatagatgccctcagggtattaactccagccttgaaggtgctgagaagagaaaatgt
gatggaaattctgctgttaaagagaatcccctccttgaaaaaataaaggttaggatgcta
acagaatttgaggaaggagggaaaaatgctatagaaaaggtgtcaggcatgccctttgat
ggacagctggaactcagtaactctgatcagaagagcactaagaatgcatgttctgcagca
aaaggatgcagacgttcaactagaacaaggtgtgctatacgtttagtagttgacagaaac
ccagattcctttggtccagatgagccactgattgatagctatccaagcagtgaagaacca
aataaagttgattgtgagcaaagacaagtcagacgcagcaggaggcttcagctgctttct
aaagagacaggaaaaatgagaataactaaggaagcaagaaattctgacagtggcccagaa
gggtctgtctttggagttgaaaggaatgtgttagttcacaattcccagtgcaaagacttg
aggaagcagcaggatatactgaattgcacatcactcactgatcggaatggtgctgatctg
gtagcaaatggaatacagattagtctgaagaattcagctgatataacaaaaaacagaagt
ctcttcaatcctacattttcttgtcagcattcaaattttaattccccttcactcaaagca
ggttctcaagaaggggaaatgctaggtagacttttcctcctacagtctccttcaaagact
gttctggacactgcttccatcctgactgaagagaagaggtctgggtcatggactgttttt
ccccaggacaaaagatgctgttcacagaatgttcccgaggacttcagaattgaaaagtca
ccaatggctaaaaatgtttcagaattgaccgtggaagctgaagacagtgagttagacatg
caacatctgcgaaatacatttaggagttcaaaacggcagtcttttagtctttatcctgct
cccatgaagacatgtaccacagatgatgttgaagctgaaaaactgaatactctgtgtcct
gatcaagtagaaaaaaggcctagtaaatattttatgacagaaaacttacaagaaaagaaa
acaactgcggaaaatttgagtagtgtttgtgagaagtttaagacgtgtgaatctgcttgt
gttagtcctgtgtcgtgctctgtcagcaatgctgaatgtgtgcatgctgtggagcatcaa
gaagatattttaaatgttgcaaatcatgggagtctgacgacactagtaagaatgtgtgct
actaggaatgaaggcagaaacagaccgcaagagggagagcaggagagtgaaaagacattg
tcagctgacataggggtagaaagcaaattgagactgagtccagtcggaagcaaaagaaat
ctcagtgatcggagtaatgcagaagagcatgctttccaaagaacagacctgaacacagtc
agtgaaacatacttcagttcagaaagcaatcaagtggaaaatgctgaagttgttgatggc
aaagcaccaatgcaactttttcagcccagtccaatggtttgccctacagcttctcaacaa
aatccagctgagttcaactgcagagtcactgaaaaaaaaatcagcaaaaaagagggaagt
ctggtaaagggcaatgaagagcgactaatccaaactgtcagcacagggttgtcagagtat
ttagttggggaggcactagaagaatctcttaaagtccacagtgattttacggatctgtct
gaaacccctgatggcttactgtgttctgacaatgatactgaagatagtgccagtttttat
gtaactaataggaaagacacatctgctgtgttcgtaaaaagaagcagtgctgccctggtg
aacatagtaaatgattcagttgttagctgtaagccaagatctgaaggtattcagaggtct
cagagaagagcccagaaactgcaatcttcagatgaagaatctagtgaggatgaagattta
ccatgttttcaggaattaatgttcggcaaatcagtaagcacacctttgcagatcaaaaaa
caggtgacatctgtggtacagtcttcagcaaatcccagcatgttgcctcgcagtgaatgt
cttaatgaaaataatgaacagaaaacacttgaagctgccctaagcaatgagtgtgtttca
ccaaaccaggagtcagaatgctctgtgaagttattttcttcccagtctaacatatctgaa
gaatcagttgatggagcacaggagctgaggaagactttaacacaagtgagcgacgtaaat
aagagtaaggaagctcttcaaagttgcagtggagggctgaagagaagaaaagatgactcc
aatgatgagtaccaagaagatccaaatatgggggcaaacctaggtgaagcatctggatat
gacagtgaaacaagtcgtgtagaggattcacatgaaccattttctcaggatgaaattctt
tctacacagcagaagaatgctatgcagaataacctaaaaaagctacaagaagaaatggct
gtgcttgaggcagtgctaaagcagcatgcaagtcaggacactgaggtattgcccttatgt
agagaagtgccatattccggtagtggaggaacgcttggagtggagcagatgagacaagaa
acggaaaatgcatctgagcatgactctgagaccaagctaagtaaggcacctgttttatca
gttctctgcagaaatgtgaccagcaatccaaatagctcttcctcctctgtaaagcaccct
tgccctcaaactgcacaaacaacaaataattctgctgtagctcagtgtgataacaaaagc
agtgttcgagtacgtgaatcaaagagaaatgtatgttttcctacatctgtattgcacaat
gcagctgggaaagaaaatgctgcaagttcagatacaacttacaggacagaaatgtcaatt
gtggcatccggtctgaatcaaagtgaacatttgatggtccagaagtttgccagaaaaact
cagagcactttctctaatcacattacagatggaacgacccatgtcataatgaaaacagat
gaggagctggtatgtgaacggacattgaagtacttcctgggtatcgcaggaagaaaatgg
gtagttagttaccagtggataattcagtcttttaaagaaggcaggatactggatgaggag
aactttgaagttaaaggagatgtaatcaatggcagaaaccaccagggtcctaagagggct
aggcaatctctcgctgaaaagatctttaaagactttgagatctgctgctatggacctttc
actgatatgactgcaggacatttagaatggatagtggagctttgtggtgcctctgtagtg
aaacaacttcatctgttcacgcacaaagtaaattctactgctgttgttgttgtgcagcca
gatgcttggatggaaggcacaagttatgaagcaatccagcaaaagaacaatgttgctgtg
gtgactcgagagtgggtgttagacagcgttgcttgctttgagtgtcaggagttggacgct
taccttgtgtcctga
DBGET
integrated database retrieval system
