Thrips palmi (melon thrips): 117645942
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Entry
117645942 CDS
T08251
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
tpal
Thrips palmi (melon thrips)
Pathway
tpal03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpal00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117645942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpal03041
]
117645942
Spliceosome [BR:
tpal03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117645942
Complex C
U5 SnRNP specific factors
117645942
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
117645942
NCBI-ProteinID:
XP_034242404
UniProt:
A0A6P8ZNI3
LinkDB
All DBs
Position
Unknown
AA seq
973 aa
AA seq
DB search
MDADLYDEFGNYIGPELESDDEEEESYAGRDVDQDQDYDDDANDDGDADMDVAPMAVVLH
EDKQYYPSAADVFGPEVETIVQEEDTQALTTPLIAPVKEHKFQVKEQQLPDTVYSMEFLA
DLMDTPTLIRNVALVGHLHHGKTTFVDCLMQQTHPALVTNEERNLRYTDTLFTEQERGVS
IKSMPVTLVLPDIRSKSHLFNVLDSPGHVNFSDEVSAAMRISDGVVVFVDAAEGVMLNTE
RLIKHAVHEKLAITLCINKIDRLMLELKLPPQDAYYKLRQIIEEVNGLLGLYSEEENPIF
VSPILGNVCFASAQYGVCFTLKSFANIYAQTYPQVNVKEFARRLWGDMYFNSKTRKFSKK
SPHGSAQRSFVEFILEPLYKLFAQVVGDVDSTLADALEELGIRLSRDEMKINIRPLLRMI
CGRFLKDFSGFVEMCVEHIPSPADNARTKVQHVYTGPVESDLGDDMCGCDPEGRLMVHST
KMYPTEDCTSFVVLGRVLSGTLHAGQEVRVLGENYSLQDEEDSRILNVGRLWIYEARYKI
EVNRVPAGNWVLIEGIDQPIVKTATITDTSTVDDLFIFRPLKFNTQSVIKIAVEPVNPSE
LPKMLDGLRKVNKSYPLLSTRVEESGEHVVLGTGELYLDCAMHDLRKMYSEIDIKVADPV
VAFCETVVETSSLKCFAETPNKRNKLTMIAEPLEKGLAEDIENEVVHISWNKKRLGEFFQ
TKYDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKSLLNSVKDSIVQGFQWGTREGPL
CEEPIRNVKFKILDAVIANEPLHRGGGQVIPTARRVAYSAFLMATPRLMEPYLFVEVQAP
ADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLS
VFHHWQIVPGDPLDKSIVIRPLEPQPATHLAREFMIKTRRRKGLSEDVSINKFFDDPMLL
ELARQDVMLNYPL
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atggacgctgacttgtatgatgagttcggaaactacatcgggccggagcttgagtctgac
gacgaggaagaagaaagttatgccggtcgggatgttgatcaagatcaagattacgatgat
gatgccaatgacgatggagatgcagacatggatgtcgctcccatggctgttgtactccat
gaggacaagcagtattatccatctgcagcagatgtctttggtcctgaagtagaaactata
gtacaagaagaggacactcaggcactgacgactccactgatagcaccagtgaaggagcac
aaattccaagtgaaagaacagcaactgccagacactgtctacagcatggagttccttgct
gatcttatggacacacctactctaattcggaatgttgccctggttggccatcttcaccat
ggtaaaaccacatttgttgactgcctgatgcaacaaactcaccctgctctagtcactaat
gaagaaagaaatctgcgttatactgatacacttttcactgaacaagagcgaggtgtcagc
attaagtccatgcctgtgacactcgttttgcctgacattagatccaagtcacatcttttc
aatgtgcttgattcacctggacatgtcaatttctctgatgaagtttctgctgccatgaga
atatctgatggtgttgttgtgtttgttgatgctgctgaaggcgtcatgcttaatacagaa
cggctgatcaaacacgctgttcatgaaaaactggccattactctatgtataaacaaaatt
gatcgcttgatgcttgaacttaagcttcctcctcaagatgcctattacaagttgaggcaa
attattgaagaagtcaatggtctcttgggtctctattcagaggaagaaaatcccattttt
gtgtcacctattcttggaaatgtctgttttgcaagcgcacaatatggagtttgttttacc
ctaaaatcttttgcaaacatatatgctcagacttatcctcaagtaaatgtaaaagaattt
gccagacgtctttggggtgacatgtatttcaacagcaaaacccgcaagttctctaagaaa
tcacctcatgggtcagctcaacgcagctttgttgagtttattttggaaccgctgtacaag
ttatttgcccaggttgttggagatgttgactcaactttggctgatgctcttgaagaactg
ggtattcgtctctctcgtgacgaaatgaagataaatattcgtcccctccttcgaatgatc
tgtggcagatttctgaaggacttcagtggctttgttgaaatgtgtgtggaacatatacct
tctcctgctgacaatgctcgtactaaagtacagcatgtttatactggtccagtggagtcg
gatcttggtgatgatatgtgtggatgtgatcctgaaggtcgcttaatggttcacagtaca
aaaatgtacccaactgaagattgcacatcctttgtggttcttggtcgggttctcagtggt
acacttcatgctggtcaagaagttagggtcctgggtgaaaactacagtctccaagacgaa
gaggattctagaatcctaaatgttggcagactctggatttacgaggctcgctacaaaatt
gaagtcaatcgcgtaccagctggcaattgggtacttattgaaggaattgaccaacccata
gtcaaaacagccaccatcacagacacatcaacagttgatgatttatttatcttcagacca
cttaaattcaacactcaatcagtaataaagattgcagttgagccagtcaacccctcagaa
ttgcctaaaatgttagatggactacgtaaagtgaacaaatcttatcctctgctatcgacc
agagttgaagagtctggggagcatgttgttctcggaacaggtgaactgtacctggactgc
gctatgcacgacttgagaaaaatgtattctgaaattgatattaaagtggcagatccagtt
gtagctttctgtgaaacggtggttgaaacatcttcccttaaatgttttgctgaaacaccg
aacaaacggaacaaattaactatgattgcagagcccttagaaaaggggctggcagaggac
attgaaaatgaggttgtacatatatcttggaataagaagagactgggtgaatttttccaa
acaaaatatgactgggatcttcttgctgcccgttccatttgggcctttggtccagacact
actggcccaaatattcttgttgatgacacattgccctctgaagttgacaagagtcttctt
aattcggtgaaagactccattgtgcagggtttccaatggggtacaagggaaggacctctc
tgtgaagagcctatcaggaatgtcaaatttaaaattttggatgcagttattgctaatgag
cctttgcataggggaggtggtcaggttatccccactgcccgtagagttgcatattctgcg
ttcctcatggccacaccccgtcttatggagccatacctctttgtggaggtacaggcgcct
gcagactgtgtgtccgctgtttacacagttctggccaagagaagagggcacgtcactcaa
gatgcacctgtaccaggatctccactgtataccattaaggcattcatcccagcaattgat
tcatttggatttgagacagacttgaggacacacactcagggacaagcattctgcttgtct
gtcttccatcattggcagattgtacctggggatcccctggataaaagtatcgtcattcgt
cctctggaacctcagccagctactcatctcgcccgagaattcatgatcaaaactagaaga
cgcaagggtctaagtgaagacgtgtccattaacaaattcttcgatgatcctatgttgctt
gaacttgctcgtcaagatgtcatgcttaattatccactttaa
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