Treponema pallidum subsp. pallidum Sea 81-4: TPSea814_000634
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Entry
TPSea814_000634 CDS
T03185
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tpas
Treponema pallidum subsp. pallidum Sea 81-4
Pathway
tpas03030
DNA replication
tpas03410
Base excision repair
tpas03420
Nucleotide excision repair
tpas03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tpas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TPSea814_000634
03410 Base excision repair
TPSea814_000634
03420 Nucleotide excision repair
TPSea814_000634
03430 Mismatch repair
TPSea814_000634
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpas03032
]
TPSea814_000634
03400 DNA repair and recombination proteins [BR:
tpas03400
]
TPSea814_000634
Enzymes [BR:
tpas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TPSea814_000634
DNA replication proteins [BR:
tpas03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TPSea814_000634
DNA repair and recombination proteins [BR:
tpas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TPSea814_000634
NER (nucleotide excision repair)
GGR (global genome repair) factors
TPSea814_000634
MMR (mismatch excision repair)
DNA ligase
TPSea814_000634
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TPSea814_000634
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
BRCT
PTCB-BRCT
DNA_ligase_OB
HHH_2
HHH_5
BRCT_2
DNA_pol_lambd_f
MutS_III
Motif
Other DBs
NCBI-ProteinID:
AHN67302
LinkDB
All DBs
Position
693504..696026
Genome browser
AA seq
840 aa
AA seq
DB search
MHAWEVRPGRYTLRPCAMSTAQRRVQELEKLILHHQDRYYNAESDISDDAFDALWEELAR
LDPGNPLLKAIGSDSQRDAVKKRHIVPMGSQHKAADEESFSAWAKKNALQAFLVQHKLDG
VSLELQYERGHFCCALTRGNGIVGDDVTANVRGMRGFVPTLTAEWGPCGNLPFTGGVRGE
VIMHKDIHRSHYPTHANCRNTVNGILKRKDGRGRTHLHIVCYDAVPGTPGKPFTGSLPFA
DETEKLAWLARQGFVTVHSHRCANAQEVVALRSEIMRTRELLPYSIDGLVVKSTDLDFQD
AQLPRPKKQIAFKFSTQEAITTLRDVQWQTSGVTYTPIGITDPVRLAGTTVKRANLCNPN
MLTKLCLKIGSHVLISKRGEIIPKIEALVSTPAHAQEIHIPTQCTSCNTVLENSGSRLFC
PNVNCPLLSHHRITRWIECLEIKHVGTELIQRLFEEKKVRRIPDLYTLTCEDLIEIEHVG
NATAKKILEAIHHKKEIALQTFIAGFGIEGIGETMGEKLICAGFDTLEKVLHATTETLES
IYQFGTELAKSVVTGIARVKDDMCELLDRGFVRILAKQQAESPLRGKSFCFSGSLRNGDR
ATIHRIRALGGVVRTSVTRDLSYLIFESLSQPYRTAQKLKKEQGVALEIISEDEFCRLLD
QASASCTHTGETVHPLQGKSFYFSGASRSMNHKHAQEKVRALGGDVASSVTAQLDYLVFY
SQSTRYRTACALGIQIISEETLHKLIATAQSPLHTDAHVHAPLHGMSFCFSGDLDGMTRA
QAIALVQRLGGTVKTAVSTQLTYLVSNDPHGQSRKCQNAVRCGVRIISEHVFLALCTPGT
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
ttgcacgcgtgggaggtgcgccccggacgctacacattgcggccttgtgctatgagtact
gcgcagagacgtgttcaagaacttgaaaagctcattcttcaccatcaagaccgctactac
aacgcggagtctgatatttcagatgacgcctttgacgcgctttgggaagaacttgcaagg
cttgatcctggaaatccgctgcttaaagcaatcggttctgacagtcaacgtgacgcagtg
aaaaagcgccacattgttcctatgggtagtcaacacaaagctgcagacgaggagtccttc
agcgcatgggcaaaaaaaaatgcattgcaggcatttctcgtccaacacaaactcgatggc
gttagcttagagttgcaatacgagcgcggtcatttttgctgtgcgctcacccgtggtaac
ggcattgtcggagacgacgtcactgctaacgtacgcggcatgcgtggctttgtgccgacc
ctcactgcagagtggggaccttgcggcaatctccccttcacggggggtgttcgtggcgaa
gtcattatgcacaaggatatacatcgttcccactatcctactcacgcaaattgccgcaac
accgtaaacggcatcctaaagcgaaaggacggccgcggccgcacccacctccatattgtt
tgttacgacgcagtacccggcacccccggtaaaccgttcaccggctccctcccctttgct
gatgaaacagaaaagcttgcctggctcgcgcgccaaggtttcgtgacggtacattcgcat
cgctgcgctaacgcacaggaagttgttgcactccgatctgagattatgcgcacgcgcgag
ctgttgccttacagcatcgatggcctggtagtaaagagtaccgatcttgacttccaggac
gcacaacttcccagacctaaaaagcagatagcctttaagttcagtacacaggaggcgata
accaccttgcgtgacgttcaatggcaaacatcaggagtgacgtacacgcccattggtatt
accgatccagtgcgccttgcaggaactacggtcaagcgcgcaaatttatgtaacccgaat
atgctcacaaagctgtgtctcaaaattggcagccacgttttaatttccaaacggggggag
attatcccaaaaattgaagcactcgtttcaaccccagcacatgcgcaggaaatccacata
ccgacacagtgtaccagttgcaacacagtgctggaaaacagtgggagcaggcttttttgt
cctaatgtaaactgccccctgctctcgcatcaccgcattacacggtggattgagtgtttg
gagatcaagcatgtggggaccgaactcattcagcgtctttttgaagaaaaaaaggtacgc
cgcatcccggacctctacacgctcacctgcgaggatctcattgagattgagcacgtcggc
aatgcaactgcaaaaaaaatactcgaagctatacaccacaaaaaagaaatagcgttgcaa
acgtttattgccgggtttggcatcgaggggatcggagaaaccatgggagaaaaacttatc
tgtgccggttttgacacacttgaaaaagtgctccacgcaacaacggagacactcgagtcc
atctatcagtttggaacagaacttgcaaaaagcgtggtaaccggtattgcacgggttaag
gatgatatgtgtgaactgcttgatagaggcttcgtgcgcattcttgccaagcagcaggca
gagtcgccactccggggaaaaagcttttgcttctcaggctccctcagaaatggagatcgc
gcgactatacaccgtatacgcgcgctcggaggcgttgtgagaacgtcagttactcgagac
ctttcgtacctaatattcgaaagcctatcacagccctatcgcaccgcgcaaaaactaaaa
aaagaacagggggtagcgctagaaattatttcggaagacgagttttgcaggcttctagat
caagcttccgcatcctgtacccatacgggggaaaccgtacaccccttgcaaggaaagagt
ttttatttctcaggtgcgtcgcgcagtatgaatcacaaacatgctcaagaaaaagtgcgc
gcgttaggaggggatgtcgcatcgtccgtaacagcccagcttgactatctggtgttttac
agtcagtcgacacgttatcgcaccgcatgcgcgttgggaatccaaattatttcggaagag
acgctccacaagcttattgccactgcccaatcgcctttgcatacggatgcacacgtgcac
gcgccattgcacggcatgagcttctgcttctctggcgatctcgacggtatgacacgcgcc
caggcaatcgcgctcgtacaacgcctaggcggaacagtgaaaacggctgtcagtacacag
ctgacgtatctggtgtcaaacgatccacatgggcagtcacgcaaatgccagaacgctgtt
cggtgtggcgtgcgtattatcagtgagcacgtctttctcgctctgtgcaccccggggacc
taa
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