Trueperella pecoris: HLG82_06855
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Entry
HLG82_06855 CDS
T07390
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tpec
Trueperella pecoris
Pathway
tpec03030
DNA replication
tpec03410
Base excision repair
tpec03420
Nucleotide excision repair
tpec03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tpec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HLG82_06855
03410 Base excision repair
HLG82_06855
03420 Nucleotide excision repair
HLG82_06855
03430 Mismatch repair
HLG82_06855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpec03032
]
HLG82_06855
03400 DNA repair and recombination proteins [BR:
tpec03400
]
HLG82_06855
Enzymes [BR:
tpec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HLG82_06855
DNA replication proteins [BR:
tpec03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HLG82_06855
DNA repair and recombination proteins [BR:
tpec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HLG82_06855
NER (nucleotide excision repair)
GGR (global genome repair) factors
HLG82_06855
MMR (mismatch excision repair)
DNA ligase
HLG82_06855
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HLG82_06855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QOQ39187
LinkDB
All DBs
Position
complement(1452485..1455091)
Genome browser
AA seq
868 aa
AA seq
DB search
MGDNDGVNIDEATARWNEIAPKLRRAQEAYHSTGEPVMVDATYDALIAQMRALEAQFPQL
WSPQSPTMKVGAKVARGAVAQLRHAQRMYSLQDVFSREELAAWFSSVAAELPAASRFTAE
VKVDGLALNLTYRRGVLDSAATRGDGVTGEDVTRNALAIDAIPAKLLGEDWPELVEVRGE
VYFPIAKFDEYNRLVEARNEEIARRNGEIDAFNKALRSTNARRTKEGLPALERVQREGQL
KTFVNPRNAAAGTMRQEDATGFAIKSLSFIAHGIGALEGTSQELEERLATQEGVYEVFTS
WGLPVSRETVMVSSMPEIEAFLDRYQHARLSLDHEFDGVVIKLEDRRVQEQLGYTARVPR
WAVAFKFPPTEVQTRLLDIRVQVGRTGRVTPFAVMEPVWVDGSTVAQATLHNPYEVERKG
VKIGDVVIVRKAGDIIPEVVGPVLAERDGSERAFVMPGNCPACGGAIEPAKEGDKDLRCS
NTRSCPAQLHQRVIHIGSRGALDIESLGEESAQWLADPEAYRQDVLIALATGHTVEFTDE
HALAAAEAGWPLEKAADPRVAMRLSLEKRIECGIVDDDGALLDPESIIAPHIQRELGIPA
AQKPYLDTEAGLFALRAEDLENVCTWQPVREGGQDTGDWRYVRAGWTKPTWLKPSAHREN
FEIRRASAPSKTLEKVLDEIEKAKTKDLWRKIVALNIRHVGPVAARALAERFGSLDALLE
TGRAQIAAGEVPFADVDGVGEIIARSLMDWFDEPWHAEIVQAWQRDGVTFADESVGDGSA
TDAAPGPLDGMTIVVTGSIEGFTRDGVAEAIAKAGGKATGSVSKKTTAVVVGENPGASKT
TKAEALGIPMWTPEVFLAKLRGQRNGVH
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgggggacaatgatggggtgaacatcgacgaagcaactgcacgctggaacgaaatcgcc
cccaaactgcgcagggcgcaagaggcctaccattcgacgggtgaacccgtcatggtcgat
gccacctacgatgccttgattgcgcagatgcgcgccctcgaagcgcagtttccgcagctg
tggagcccacagtcgcccacgatgaaggtgggagcgaaggtcgcgcgcggtgcggttgcg
cagttgcgtcacgcccagaggatgtattccctccaggatgtgtttagccgggaagaactc
gctgcctggttttcgtcagtggccgccgaattgccagcggcgagccggttcaccgctgag
gtcaaggtcgatggcctggcgttgaacctgacctaccggcgtggcgtgttggacagcgca
gccacgcgtggtgacggcgtgacgggcgaggacgtgacgcgcaacgcgttggccatcgat
gccatccctgccaagctgttgggcgaggattggccggagctggtcgaggttcgcggcgag
gtctatttcccgatcgcgaaattcgatgagtacaaccgcctcgtggaggcgcgcaacgag
gagatcgcccggcgcaatggcgaaattgacgcctttaataaggcgttgcgatccacgaac
gcgcgccgcaccaaggagggcctgccggcactggaacgcgtgcagcgggaaggccagttg
aagacgttcgtcaacccgcgcaacgcagccgccggcacgatgcgccaggaggacgccact
ggttttgccatcaagtcgctgagcttcatcgcgcacggaataggagcgttggaagggacg
tcgcaagagctcgaggaaaggctcgccacgcaggagggagtctatgaggtcttcacctcg
tggggattgccggtctcccgcgagacggtcatggtctcctcgatgccagaaattgaagcc
ttccttgaccgctatcagcatgcgcgcctgagcctcgatcacgaatttgacggggtagtg
atcaagctcgaggaccgccgggttcaagagcagttgggctacacggcccgcgtgccgcgc
tgggcggtcgccttcaaattcccgcccacggaagtacaaacccgcctgctggacattcgc
gtgcaagtggggcgcacgggccgcgttacccccttcgccgtgatggaacccgtgtgggtt
gacggttcgaccgtcgcccaagcgaccctccacaacccctacgaggtagaacgtaaaggg
gtcaagatcggcgacgtggtgatcgtgcgcaaggcgggtgacatcatccccgaggtggtc
ggtcccgtcctggccgaacgcgacggctcggagcgtgcgttcgtcatgcccggaaactgc
cctgcatgcgggggcgcgatcgagccggcgaaggaaggcgacaaggacttgcggtgctcg
aacacacgctcctgccctgcacagcttcaccagcgcgtcatccacatcggttcgcgtggt
gcgctcgatatcgaatccctgggcgaggagtcggcgcaatggctcgccgatcccgaggcc
taccgccaggacgtgctcatcgcgctggcaaccggccacacggtcgaattcacggacgag
cacgcgctcgcggcggcggaggccggatggccgctcgagaaggccgccgatccgcgcgtg
gcgatgaggctttctctcgagaagcgaattgaatgcggcatcgttgacgacgacggcgcc
ctcctcgacccggagagcattatcgctccccacatccagagggagctcgggatccccgcc
gcgcagaagccttacctggatacggaggccggcctctttgccctgcgcgccgaggacctc
gaaaacgtttgcacgtggcagcccgtccgcgaaggcgggcaagacaccggcgattggcgt
tatgtccgcgcaggctggacgaagcccacctggctcaagccgagcgctcatcgggaaaac
ttcgagattcgccgtgcctctgctccgtccaagacactcgaaaaggtcctcgacgagatc
gagaaggccaagacgaaggatctatggcgcaagattgtggcgctcaacatccgccacgtc
gggcccgtggccgcccgggcgctcgcggagcgtttcggctccctggacgcgctcctcgag
accggtcgcgcccagattgcggctggcgaggtgccttttgccgacgtcgatggcgtgggt
gagatcatcgcccgctcgttgatggactggtttgacgagccgtggcatgccgagattgtc
caggcgtggcagcgcgacggggtgacgttcgctgacgagagcgtgggagacggatctgct
accgacgccgcaccggggccgctggacggcatgacgatcgtcgtgacgggctcgatcgag
ggattcacgcgcgacggcgtcgcggaggctatcgccaaggcgggtggcaaggccaccggc
tcggtgtcgaagaagaccaccgccgtggtggtgggtgagaacccgggcgcctcgaagacg
acgaaggccgaggcgttgggcatcccgatgtggacgccggaggtttttctggctaagttg
cgtgggcaacgcaatggagttcattag
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