Tunicatimonas pelagia: P0M28_23370
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Entry
P0M28_23370 CDS
T09207
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tpel
Tunicatimonas pelagia
Pathway
tpel03030
DNA replication
tpel03410
Base excision repair
tpel03420
Nucleotide excision repair
tpel03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tpel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P0M28_23370 (ligA)
03410 Base excision repair
P0M28_23370 (ligA)
03420 Nucleotide excision repair
P0M28_23370 (ligA)
03430 Mismatch repair
P0M28_23370 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpel03032
]
P0M28_23370 (ligA)
03400 DNA repair and recombination proteins [BR:
tpel03400
]
P0M28_23370 (ligA)
Enzymes [BR:
tpel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
P0M28_23370 (ligA)
DNA replication proteins [BR:
tpel03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
P0M28_23370 (ligA)
DNA repair and recombination proteins [BR:
tpel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
P0M28_23370 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
P0M28_23370 (ligA)
MMR (mismatch excision repair)
DNA ligase
P0M28_23370 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
P0M28_23370 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
HHH
TnpW
Nlig-Ia
Auto_anti-p27
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
WKN41986
LinkDB
All DBs
Position
complement(5469058..5471067)
Genome browser
AA seq
669 aa
AA seq
DB search
MTAEEAKSAIEQLSAKIRHYNHQYYQNSISEISDYAFDQLLEQLIQLEEQYPQYRYPDSP
SQRVGGTITKDFETVFHTYPMLSLSNTYSEEELAEFDQRVAKALPEQAYEYFCELKFDGV
AISLRYENGLLTLAATRGDGVRGDDITANAKTIRSLPLRVQAENLPPTFEVRGEVFMPRS
VFDQLNQEREASGEALLANPRNTTSGTLKMQDSSLVAQRKLDCYLYSLATDGIHIETHQE
AIALLEKWGFQVSPTYRKCQSVEEVSAYINGWEEKRSELPLDTDGIVIKVNSTQQQKLLG
STAKSPRWAIAYKYKTQSAVTILRDITYQVGRTGAITPVANLEPVALAGTIVKRASLHNA
NEIERLGVRYGDTVSVEKGGEIIPKITGVDISQRSAQSQPIQYVTHCPECNTLLVRQEGE
AVHFCPNQAGCPPQIKGRIEHFIQRNAMNIDSMGKETVALFYEQGLVKNVANLYALSFDD
IFALEGFKEQATQNILSGIEASKQISFPRVLFALGIRYVGRTVAEKLAEHFGSVDSLAIA
SHEQLIEVPEIGERIAQSVLEYFRDTENQQLVNELKQAGLQFSLQISDQTPENQVLSGKT
FVVSGVFEQLSREEIKEKIKLHGGKVLSSVSAKLDFLLAGTNMGPAKRKKAESLEVQIIS
EEEFLAMLD
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgaagaagccaaaagtgctatagagcaactcagtgctaaaatccgccattac
aatcatcagtactaccagaatagtatttcagaaatttcggattatgcgttcgatcagttg
ttagagcaactcattcagctagaagaacagtatccgcagtatcgctaccccgattctccg
agccaacgcgtgggtggtaccattaccaaagattttgagacggttttccatacttatccg
atgctctcgctgagcaatacgtattctgaagaagagctagcggaatttgaccaacgggta
gccaaagctctgcccgagcaagcgtatgaatatttttgtgagttaaagtttgacggagta
gctattagtcttcgctacgaaaatggcctactcacgctggctgctactcgaggcgatgga
gtgcggggcgatgatattacggccaacgccaaaacaattcgctcccttcccttacgagta
caagctgagaacttgccccccacgtttgaagtacggggtgaagtatttatgccccgctca
gtttttgaccagcttaaccaagaacgggaagcatccggcgaagctctactggctaacccc
cgaaacactacttcaggaacgctgaaaatgcaagattcttcgctggtagcccaacgcaaa
ctagactgctatctgtattcgctcgctacggacggtattcatattgaaactcatcaagaa
gctatcgctttgctagaaaaatggggatttcaggtgtcgcctacttaccgtaagtgccag
tcggttgaagaggtttctgcgtacattaatggttgggaagagaaacgcagcgagttgccc
ctagataccgacggtattgtgattaaggtgaatagcacccagcagcaaaaactgctgggc
agtacggctaaaagtcctcgctgggctattgcctacaaatataaaacccagagtgcggtt
actattttgcgcgatattacgtaccaagtgggccgtactggtgccattactcccgtagct
aacctagagccggtagctctagcgggaaccatcgttaagcgagcttcactgcacaacgct
aatgagattgagcggctgggcgttcgctacggcgatacggtttcggtggaaaaaggcgga
gaaattattccgaagattaccggggtagacatcagccaacgttccgctcaaagtcagccc
attcaatacgtaacccattgcccggaatgcaataccttactagtacgacaagagggcgaa
gctgtacacttttgccccaaccaagcgggctgtccacctcaaataaagggacgtattgaa
cattttatccagcgtaatgcgatgaatatcgatagcatgggtaaagaaacggtggctcta
ttttacgaacagggattagtaaaaaacgtagccaatttgtacgctctatcgtttgatgac
atttttgctttggaagggttcaaggaacaggctacccagaatattttaagcggaattgaa
gcctcgaagcaaatttcttttcctcgcgtgctctttgcgttaggaattcgctacgtggga
cgcactgtggcagaaaagttagccgaacacttcgggtcagttgattccttagcgattgct
tctcacgaacaactgattgaagtgccggaaattggcgagcgtattgctcaaagtgtacta
gaatattttcgcgataccgaaaatcagcagttggtgaatgaactaaaacaggcaggcttg
cagttcagcttacaaataagcgaccaaactcctgaaaatcaggtattatccggcaagaca
tttgtggtttctggggtatttgagcaacttagccgagaagaaattaaagaaaagattaag
ttgcacgggggaaaagtactttcatcggtttctgccaaactagattttttgttagctggt
acgaatatgggtccggctaaacggaagaaagcagaatcattagaagtgcagattatctcg
gaagaagaatttctagcgatgcttgattaa
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