Treponema phagedenis: FUT81_15540
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Entry
FUT81_15540 CDS
T06342
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tphg
Treponema phagedenis
Pathway
tphg03030
DNA replication
tphg03410
Base excision repair
tphg03420
Nucleotide excision repair
tphg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tphg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FUT81_15540 (ligA)
03410 Base excision repair
FUT81_15540 (ligA)
03420 Nucleotide excision repair
FUT81_15540 (ligA)
03430 Mismatch repair
FUT81_15540 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tphg03032
]
FUT81_15540 (ligA)
03400 DNA repair and recombination proteins [BR:
tphg03400
]
FUT81_15540 (ligA)
Enzymes [BR:
tphg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FUT81_15540 (ligA)
DNA replication proteins [BR:
tphg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FUT81_15540 (ligA)
DNA repair and recombination proteins [BR:
tphg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FUT81_15540 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FUT81_15540 (ligA)
MMR (mismatch excision repair)
DNA ligase
FUT81_15540 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FUT81_15540 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
HHH_2
PTCB-BRCT
RNA_pol_A_CTD
DNA_pol_lambd_f
BRCT_2
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QEK10710
LinkDB
All DBs
Position
complement(3418842..3420788)
Genome browser
AA seq
648 aa
AA seq
DB search
MKRNPRAVELEKLIRYHQDLYYNKEAEIPDSEFDALWDELRALEPENELFFTVPKESSDG
FPKASHIIPMGSQEKAANPEAFTAWALKMPFTQFLVQYKLDGASLELQYERGRFVRAVTR
GDGKIGDDITANVRKMQGVVSELQGESAPAGAQPFSGGIRGEVLMTKEIHKKFYADKANC
RNAANGLMKRKDGSGSEHLLVICYDAVQGSPEKPFTGTAPFSTELEKLAWLKRNGFSTVE
IQVCNSIQEVIDWRAHVMDIRESLPYDIDGLVIKNNLIDPDDVSRPRPEKQIAFKFSLEE
AITTLREVEWSESGATYTPIAITDPVRLAGTTVKRANLANPNMITDMNLKIGSKVVITKR
GEIIPKIETLVENTDECTEIPMPTVCGTCGSSLLNEGTRLFCPNAACPKLIHHRIEKWIA
TLDIRDFGINLIQRLFDSNKVNSIVDLYTLTVEDLASIERMGEISAKKVHSALHAKKEIS
LETFIAGFDIDGIGVTMVEKLTQAGFNTLDKLFEADEQKFSTVYQFGEVLAQNLVRGLQT
LKAEMTALIEKGFITIKPPAAPDENAPLHGMSFCFTGELTAMKRSEAEQLVKEKGGSVKS
SVTKGLSYLVTNTPESGSAKNKKAQQLGTAIITEEAFFALLQKEHKTE
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgaaatccgcgggctgtcgagcttgaaaagcttatccggtatcatcaagatttg
tattataataaagaggcagagattccggactcggagtttgatgcgctgtgggacgagctg
cgcgctcttgagccggagaatgaattgttttttaccgtcccgaaagagtcaagtgacggt
tttccgaaggcaagtcatattatcccgatggggagtcaggagaaggcggcgaatcccgaa
gcgtttaccgcatgggcgcttaaaatgccttttacgcagtttcttgtgcagtataaattg
gacggcgcaagtcttgagctgcaatatgagcggggaaggtttgtaagggcggttacccgc
ggtgacggaaaaatcggcgatgatatcacggcgaatgtcaggaaaatgcagggcgtcgtc
agtgaattacagggcgagtccgctcctgcgggggcgcagccttttagcggcggtatccgc
ggcgaagtgttgatgacaaaggaaatccataaaaagttttatgccgacaaggcaaattgc
cgaaacgccgcaaacggtttgatgaagcgcaaggacggcagcggcagcgagcatcttttg
gtgatctgctatgatgcggtgcaaggcagccctgaaaagccttttaccggaacggcgcct
ttttccaccgagcttgaaaaacttgcatggctgaagcggaacggttttagtacggtagaa
atacaggtgtgcaacagcattcaggaagttatcgattggcgcgcccatgtgatggacata
cgggaatctcttccctatgatattgacgggcttgtgataaaaaacaatcttattgaccct
gacgatgtttcccgcccgcgccccgaaaagcaaattgcctttaagttcagcttggaagaa
gcaattaccacgctgcgcgaagttgaatggagcgaatcgggggcgacttatacgccgatt
gcgataaccgacccggtgcggcttgcgggcacaaccgtaaaacgggcaaaccttgcaaac
ccgaatatgattacagacatgaatcttaaaatcggcagcaaggtggttattacaaaacgc
ggagagattattccaaagatagaaaccttggtggaaaacacggacgagtgcacggagatt
ccgatgcccactgtttgcggcacctgcggcagctctctgctgaatgaaggcacgcgcctt
ttttgcccaaatgcggcatgtccaaaactcattcatcaccggattgaaaaatggattgca
actcttgacatacgggatttcggaatcaatttaattcagcgtttgtttgactcaaacaaa
gtgaattcaattgtagacttgtacacgcttacggttgaagaccttgcaagtattgaacgc
atgggcgagatttccgcaaaaaaagtgcacagcgctttacatgcaaaaaaagagataagc
ctcgaaacctttattgctggctttgatattgacggcatcggagttaccatggtggaaaaa
ctgacgcaggcggggtttaatacgctggataaactgtttgaagcggatgagcaaaagttt
tcaaccgtgtatcaattcggcgaagtgctggcacaaaacttggtgcggggcttacaaaca
ttaaaagcggaaatgaccgcactgattgaaaaaggttttatcaccattaaaccgcccgcc
gcaccggacgaaaatgctccgctgcacggcatgagtttttgttttaccggagagcttacc
gcaatgaagcgctccgaagcggagcagctggtaaaggaaaaaggcggttcggtaaaatca
tcggttacaaagggcttaagttatctggtaacaaacacgccggaatcgggctccgcaaaa
aataaaaaggcacagcagcttggcaccgcaattataaccgaagaagcattttttgcgctt
cttcaaaaagaacataaaacggaataa
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