Treponema primitia: TREPR_2640
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Entry
TREPR_2640 CDS
T01507
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tpi
Treponema primitia
Pathway
tpi03030
DNA replication
tpi03410
Base excision repair
tpi03420
Nucleotide excision repair
tpi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tpi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TREPR_2640 (ligA)
03410 Base excision repair
TREPR_2640 (ligA)
03420 Nucleotide excision repair
TREPR_2640 (ligA)
03430 Mismatch repair
TREPR_2640 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpi03032
]
TREPR_2640 (ligA)
03400 DNA repair and recombination proteins [BR:
tpi03400
]
TREPR_2640 (ligA)
Enzymes [BR:
tpi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TREPR_2640 (ligA)
DNA replication proteins [BR:
tpi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TREPR_2640 (ligA)
DNA repair and recombination proteins [BR:
tpi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TREPR_2640 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TREPR_2640 (ligA)
MMR (mismatch excision repair)
DNA ligase
TREPR_2640 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TREPR_2640 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
HHH_5
DNA_ligase_OB
BRCT
HHH_2
HHH_3
RNA_ligase
PTCB-BRCT
HHH
IMS_HHH_1
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
AEF85331
UniProt:
F5YR93
LinkDB
All DBs
Position
1537752..1539722
Genome browser
AA seq
656 aa
AA seq
DB search
MTRKDDRAAALERLIKGYQDSYYNGEAEISDAEFDALWDELKGLKPDSAVLLRVGEDNID
GFPKARHLIPMGSQEKAANPLEFRAWAEKMAPPSFVVQYKLDGASLELQYEKGKLLRAIT
RGDGVIGDEITRNARRMSGVAAELDIPFSGGIRGEVVMTHQVWREKYADKANCRNAANGL
MRRKDGVGCEDLSLIAYDAAAKDDDSYFTDELSKIAWLKDRGFSVTETREFATAEDVIVY
REKIAEERKGLSVDIDGLVIKDPRTDMTDLRRARPEMQIAFKFDLEVAVSVLREVVWSKS
GATYTPIGIVDPVRLAGTTVQRANLNNPDMIRGMGLKIGSPVRVVKRGEIIPKIEGLAPA
LPAGNDAVEETDISFPVECETCGTELVDIGTRLYCPNLGCPKRLLHRLEKWVSVLDIREL
GEKLIYQLFETERVRQISELYTLETAELSELERMGEQSAAKVVRHIRTKRDLSLAAFIAG
FDFDGVGETIMEKVTAAGFDTLEKIRSASVEKLAEVYGLGEITARTIVEGLADTGEEMDR
ILANGVISIAAPPRAEDQPLQGCSFCFTGELSSMKRNQAEEKVKTLGGSSKSSVVKDLSF
LVTNDPGSGSAKNAKARSLGIPIIDEEGFLAILADPAKVKAYSPAGGVGALQGELF
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgacaagaaaagatgacagggccgctgctctggaaagattgattaaagggtatcaggat
tcctactacaatggggaagctgagatatcagacgccgaatttgatgccctttgggacgaa
ttaaaaggcctgaaaccggatagcgcagttttactgcgggttggagaagacaatattgac
gggttccccaaagcccggcatctgattcccatgggcagccaggagaaggctgcaaacccc
cttgaattccgggcctgggctgaaaaaatggctcccccttcctttgtggtgcagtataaa
ctggatggggcaagccttgaacttcagtatgaaaaaggaaaactcctgcgggcaattacc
cggggtgacggggtgattggggacgaaattacccggaacgcccggcgtatgtccggggtt
gcggcggaactggatatccccttttcaggcggcatcaggggagaggtggtgatgacccac
caggtctggcgggaaaagtacgccgacaaggccaactgccggaatgccgccaacgggctc
atgcgccgcaaggatggtgtgggctgcgaggacctttccctcattgcctatgacgccgcc
gcaaaggatgatgacagttattttaccgatgaactttccaaaatagcctggcttaaggac
cggggcttttcggtaaccgaaacccgggaatttgccactgcagaggatgtgatagtttac
cgggaaaaaatagccgaggaacggaagggcctttctgtggacatcgacgggctggtgata
aaggacccccgcacggacatgaccgatctccggcgcgccaggccggaaatgcagattgcc
ttcaagtttgatctggaggtggcggtaagtgtactgcgggaagtggtttggagcaaatcc
ggcgccacctatacccccatcggcattgtagacccggtgcggcttgcggggaccacggtc
cagcgggccaacctcaacaaccccgacatgatccggggtatggggctgaagattggttct
ccggtgcgggtggtaaagcggggggagatcatccccaagattgaagggcttgccccggcc
ttgcctgcgggcaatgatgctgttgaagaaacggatatcagctttcctgttgagtgtgaa
acctgcggcacagaactggtggatatcggtacccggctttactgtcccaaccttgggtgc
cccaagcggctccttcaccggcttgaaaagtgggtttcggttttggatatccgtgagttg
ggggaaaagttgatttaccagctctttgaaacggaacgggtccgccaaatttcggaactc
tatactctggaaacggcggaactttctgaattggaacgcatgggtgaacagtctgctgcc
aaggtggtccgccatatcaggaccaagcgggacttgtccctggctgcctttattgcaggg
tttgactttgacggggtgggggagaccatcatggagaaagttaccgccgcagggtttgac
accctggaaaaaatacgttcagcttcggtagaaaaactggccgaagtttatggtctggga
gaaatcactgcccgcaccattgttgagggtcttgcggataccggggaagaaatggatagg
atacttgccaatggggtcatcagtattgctgcgccacccagggcagaagatcagcctttg
cagggttgctccttctgttttaccggggagctcagttccatgaaacggaaccaggctgag
gaaaaggtcaaaaccctgggaggctcctccaaatcatcggtggtaaaagacctttccttc
ctggtgaccaatgatcccggctcaggttccgccaaaaatgccaaagcccgcagcctgggt
atccccatcattgacgaggaaggctttttagccatactggctgacccggcgaaggtgaag
gcctacagcccggcaggcggcgtaggcgcactacagggggaacttttttga
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