Tautonia plasticadhaerens: ElP_19420
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Entry
ElP_19420 CDS
T09913
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tpla
Tautonia plasticadhaerens
Pathway
tpla03030
DNA replication
tpla03410
Base excision repair
tpla03420
Nucleotide excision repair
tpla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tpla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ElP_19420 (ligA)
03410 Base excision repair
ElP_19420 (ligA)
03420 Nucleotide excision repair
ElP_19420 (ligA)
03430 Mismatch repair
ElP_19420 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpla03032
]
ElP_19420 (ligA)
03400 DNA repair and recombination proteins [BR:
tpla03400
]
ElP_19420 (ligA)
Enzymes [BR:
tpla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ElP_19420 (ligA)
DNA replication proteins [BR:
tpla03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ElP_19420 (ligA)
DNA repair and recombination proteins [BR:
tpla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ElP_19420 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ElP_19420 (ligA)
MMR (mismatch excision repair)
DNA ligase
ElP_19420 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ElP_19420 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
HHH
TrwB_AAD_bind
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
QDV34060
UniProt:
A0A518GZP7
LinkDB
All DBs
Position
2424211..2426229
Genome browser
AA seq
672 aa
AA seq
DB search
METEDPAREIAELRREIDRHDRLYYVEAAPVISDREYDRLLKRLGDLEAAHPELITPDSP
TQRVGGAPIESFRTVRHAVPMLSIDNTYTLDEVREWDARVRRGLTDGEAVRFDVELKVDG
VAVSLRYEGGSLVLGATRGDGERGDDITSNLRTVRGVPLTLADDPPDLLEVRGEVYMTNS
ELVRLNQGRKAEGLPPFANPRNATAGSLKLLDPRLCGRRRLMFVAHGLGEVRGLDASSYE
QVLGLIRRWGIPVSPHNACFDAIEAVIEHATTWESKRHELDFQIDGLVVKVDDLGQRARL
GKRSRSPRWVIAYKYEAEQAITKILGITVQVGKTGKLTPVAELEPVPLGGTVVRRASLHN
PDEIDRKGVRIGDSVVIQKAGEIIPQVVRVEADARDGSEVPYAFPDRCPSCDSPVERIPG
EVDVRCSSPASVCPDQLKEWIRWFSHRDAMDVDGLGEKLIHQLVDKGFVHSLGDLYRLDE
QTLADLDRMGKKSAANLVRALEESKHRTLDRFLTGLTIRHVGIRIAEILARRFGSIESIR
HASLEALEAVPEVGHVVAASVREFFEDGANQALLDDLLAAGVSPQPLPELQAADGLPLAG
KTFVITGTLPHRSRPEAEALIKRAGGKVTGSVSKNTSYLLAGAEAGSKLEKARQMNITVI
DEAELERLAGGG
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggagaccgaggatccggcccgggagatcgccgagctgcgacgcgagatcgaccggcac
gaccgcctctactacgtcgaggccgccccggtcatcagcgaccgcgaatatgaccgcctc
ctcaagcggctcggagacctcgaggcggcccatcccgagctgatcacccccgacagcccc
acccagcgcgtcggcggcgccccgatcgagtcgttccgcacggtccggcacgccgtcccg
atgctctcgatcgacaacacgtacaccctcgacgaggtccgggagtgggacgcccgggtc
cgcaggggcctgaccgacggcgaggccgtccgcttcgacgtcgagctgaaggtcgacggc
gtcgccgtctcgctccgatacgagggcggctccctcgtcctcggcgccacccggggggac
ggcgagcggggggatgacatcacctcgaacctccggaccgtccggggcgtgccgctcacc
ctggccgacgatccccccgacctgctggaggtccggggggaggtctacatgaccaactcc
gagctcgtccggctcaaccagggccgcaaggccgaggggcttcccccgttcgccaacccc
cggaacgcgacggccggctcgctgaagctgctcgatccgaggctctgcggcaggcgtcgg
ctcatgttcgtggcccacggcctgggggaggtccgggggctcgacgcctcctcgtatgaa
caggtcctcggcctgattcgccgctggggcatccccgtcagcccgcacaacgcctgcttc
gacgccatcgaggcggtcatcgaacacgcgacgacctgggagtcgaagcggcacgagctg
gacttccagatcgacggcctcgtggtcaaggtcgacgacctcggccagcgggcgcggctg
gggaagcggtcgaggagcccccgatgggtgatcgcctacaaatatgaggcggagcaggcg
atcacgaagatcctggggatcaccgtgcaggtgggcaagaccggcaagctcacccccgtg
gccgagctggagccggtccccctgggcgggacggtggtgaggcgggccagcctgcacaac
cccgacgagatcgaccgcaagggggtccgcatcggcgactcggtcgtcatccagaaggcc
ggcgagatcatcccccaggtcgtccgggtcgaggccgacgcccgggacggatcggaagtc
ccctacgccttccccgatcgctgccccagctgcgactcgcccgtcgagcgcatccccggc
gaggtcgacgtgcggtgctccagccccgcctcggtgtgccccgaccagctcaaggagtgg
atccgctggttctcccaccgggacgccatggacgtcgacggcctgggggagaagctgatc
catcagctcgtcgacaaggggttcgtccattcgctgggagacctctatcggctcgacgag
cagaccctggccgacctcgaccgcatgggcaagaagtcggccgccaacctcgtcagggcg
ctggaggagagcaagcaccggacgctcgaccggttcctcaccggcctgaccatccgccac
gtcggcatccggatcgccgagatcctggcccgacgcttcggctcgatcgagtcgatccgg
cacgcctccctggaggcgctcgaggcggtccccgaggtcggccacgtcgtcgcggccagc
gtccgggagttcttcgaggacggggcgaaccaggcgctgctcgacgacctgctcgccgcc
ggcgtctccccccagccgctccccgaactccaggccgccgacggcctcccgctagccggg
aagacgttcgtcatcaccgggaccctgccgcatcgttcccgccccgaggccgaggccctc
atcaagagggccgggggcaaggtgaccggctccgtctcgaagaacacctcctacctgctc
gcgggggcagaggccggcagcaagctggagaaggcccggcaaatgaacatcaccgtcatc
gacgaggccgagctggaacggctggcggggggcggatga
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integrated database retrieval system
