Tenacibaculum platacis: T19A05C_0284
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Entry
T19A05C_0284 CDS
T11461
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tplt Tenacibaculum platacis
Pathway
tplt03030
DNA replication
tplt03410
Base excision repair
tplt03420
Nucleotide excision repair
tplt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tplt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
T19A05C_0284 (ligA)
03410 Base excision repair
T19A05C_0284 (ligA)
03420 Nucleotide excision repair
T19A05C_0284 (ligA)
03430 Mismatch repair
T19A05C_0284 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tplt03032
]
T19A05C_0284 (ligA)
03400 DNA repair and recombination proteins [BR:
tplt03400
]
T19A05C_0284 (ligA)
Enzymes [BR:
tplt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
T19A05C_0284 (ligA)
DNA replication proteins [BR:
tplt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
T19A05C_0284 (ligA)
DNA repair and recombination proteins [BR:
tplt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
T19A05C_0284 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
T19A05C_0284 (ligA)
MMR (mismatch excision repair)
DNA ligase
T19A05C_0284 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
T19A05C_0284 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
Auto_anti-p27
5_3_exonuc
F55H2_N
RNA_lig_T4_1
HNOB
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
CAL2076356
LinkDB
All DBs
Position
T190524A05C:322615..324612
Genome browser
AA seq
665 aa
AA seq
DB search
MTIKEKIESLREELNKHNYNYYVLDNATVSDYEFDIKLKELEKLEEQHPEFFDENSPTQR
VGGQITKNFNTITHKNRMYSLDNSYSKEDLLDWEKRIQKMLGTTEIEYTCELKYDGASIN
LTFENGKFVRAVTRGDGVQGDEVTANIRTIKSIPLVLSEDFVSDFEMRGEIILPLEGFNL
MNEERVANGEEPYRNPRNTASGSLKLQDSGEVAKRPLDCLLYQVVTNERKYKTHFESLEA
ARKAGFKVPHTIELAKSIEEVLEFVNSWDEKRHDLPYETDGVVIKVNSLEQQDELGYTSK
SPRWAIAYKFKAEQVSTVLNEITYQVGRTGAITPVANLEPVYLAGTIVKRASLHNSDQIE
KLDVRVGDTVYVEKGGEIIPKIIGVDLSMRPSDSEPTRYATHCPECGTELVRTDGDAKHY
CPNEFGCAPQITGRIQHYISRKAMDIDGLGAETVDLLYKEGLIENYADLYELTIDQIIPL
ERMAEKSAQNMVEGIAKSKEIAFEKVLFALGIRFVGETVAKKLAKHFKSIDNLISADFDT
LINVDEIGEKIAESVINFSKDEKNLATISRLKSYGVQLEISQEELENQSTKLEGKIIVVS
GVFHQMSRNELKKAIEDNGGKVSSSISKKTSFIVAGDNMGPSKLTKAQDLGVSIITEQDF
INMIN
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgacgattaaagagaaaatagaatctttaagagaagagttgaacaagcacaactataat
tattatgtgcttgataatgctacagtttctgattacgagtttgatataaaattaaaagaa
cttgaaaaattagaagagcagcatccagagttttttgatgagaattcacctacacaaaga
gtaggtgggcaaatcactaaaaactttaatacgattacgcataaaaacagaatgtattct
ttggataattcttattctaaggaagatttattagattgggaaaagcgtattcaaaaaatg
ttaggaactacagaaattgaatatacatgtgaattgaagtacgatggagcttcaattaat
ttaacttttgaaaacggaaagttcgtaagagctgtaacaagaggagatggtgttcaaggt
gatgaagtaactgcaaatattagaactattaaatcaattccattagttttatcagaggat
tttgtttcagattttgaaatgagaggagagattattttacctcttgaaggattcaattta
atgaacgaagaaagagtagctaatggagaagaaccatatagaaatccaaggaatactgct
agtggtagtttgaaactacaagacagcggagaggttgcaaaacgtccgttagattgtttg
ctgtatcaagtagtaacgaatgaaagaaagtataaaactcattttgagagtttagaagct
gctagaaaagctggctttaaagttccgcatacgattgaattagctaaatctattgaagaa
gttttagagtttgtaaatagttgggatgaaaagcgtcatgatttaccttatgaaacggat
ggtgtagtaattaaagtaaattcattagaacaacaagatgaactaggctacacatcaaaa
tctccaagatgggcaattgcatataagtttaaagcagaacaagtttctacggttttaaat
gaaataacatatcaagtaggaagaaccggagcaataacaccagtagctaatttagagcct
gtatatttggctggaacaattgtaaaaagagcatcacttcataattcagatcagattgaa
aaactagatgttagggttggtgatacggtttatgtagaaaaaggaggagaaattattcca
aaaataatcggagttgatttgtcaatgaggccttcagattctgagccgactcgatatgca
actcattgtccagagtgtggaactgaattagttcgtacagatggagatgctaaacattat
tgtccgaatgagtttggttgcgctccgcaaattactgggagaatccagcattacattagt
agaaaagcaatggatattgatggcttaggtgctgagactgtagatttattgtataaagaa
gggttaattgaaaattatgctgatttgtatgagttaactatagatcaaattattccgtta
gagcgaatggcagaaaagtccgctcaaaatatggttgaaggaattgcgaaatctaaggaa
atagcttttgaaaaagtattattcgcattgggaattcgatttgttggggaaactgttgca
aagaagttagcaaagcattttaaatcaatagacaatctaattagtgctgattttgatacg
ttaattaatgtagatgaaatcggagagaaaatagccgaaagtgtaattaatttctctaaa
gacgagaaaaacttagctactatttctagattgaaaagttatggagttcagctagagatc
tctcaagaagaattggaaaatcaatctactaagttagaaggaaaaataattgttgtttca
ggagtgttccatcaaatgagtagaaatgaactgaagaaagctattgaggataatggaggt
aaagtaagtagttctatttctaaaaaaacttcgtttattgttgcaggagataatatggga
ccgagtaaattaacgaaagctcaagatcttggagtatcaataattacagaacaggatttt
ataaatatgattaattaa
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integrated database retrieval system
