Trifolium pratense (red clover): 123884548
Help
Entry
123884548 CDS
T08949
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
123884548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123884548
Enzymes [BR:
tpra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
123884548
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
123884548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
123884548
NCBI-ProteinID:
XP_045789618
LinkDB
All DBs
Position
LG5:11901281..11933000
Genome browser
AA seq
1180 aa
AA seq
DB search
MTERIKFSVLCSLLTWSQRTKSPAKKRAKFRKFLDSFCTDRNYFPAIRLILPNLDRERGS
YGLKESVLATSLIDAIGLSKDSHDALRLINWRKGGSKTGANAGNFALVAAEVLQLRQGTA
SGGLTIKELNDLLDQLSSSENRAEKTLVLSTLIQKTNAQEMKWIIMIILKDLKLGFSEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEIGKAVRPQLAKRVANAAQAWK
KLHGKEVVAECKFDGDRIQIHKNGTEIHFFSRNFIDHSEYAHGMSEIIIQNILVDRCILD
GEMLVWDTSLNRFAEFGSNQEIAKAARDGLESNRQLCYVAFDILYFGDTSVIHQTLKERH
EILRKVVKPLKGRFEILIPNGGINSHPSSGEPCWSFIAHNADEVERFFKETIENRDEGIV
VKDLSSKWEPSDRSGKWLKLKPDYVQAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAERP
SPNTHPKRFISFCRVGTGLSDDELEAVITKLKPYFRKYPKKMQPSFYQVTHHSKERPDVW
VDSPEKSIILSITSEIRTIESEVFAAPYSLRFPRIDRVRYDKAWHECLDVQSFIELVQSS
NGTTQRDPEYGTNDSKPKRMKSSVRGEKKNVSIVPSHLSQTDVSGVKGGSLMFSNMMFYF
VNVPPSHSLESFHKLVAENGGTFSMNLNNSVTHCVAADNKGFKFEAAKRRGDVIHYTWVL
DCYAQKKLIPLQSKYFLFVSELTKKKLQEEIDEFSDSYYLDLDLRDIKQLLSNINRSEDV
STVDHYRKKYCPKDKWSVFNGCSIYFHTTMPSLKEDWQILLGLSSKRFKLEVLMGGGKVT
SNLKSATHVVALFVPSFHTNYDDEIHSSSFTSVERKLLGSKKLHIVNSKWLEDCLNSCQR
LSEDTYSLKPYGIEESTAEDSEHDVAADVHLVEDNVRDRNESFSNKGSKQSSAKAASQDS
LALASQEKRGPRKRGRPAGTGIKKIKTDRNQARRARSQIAKKRAKISEYESDESDSLDIR
PYEKEADITEGSLDFHNEHSKPHETEKTHNVQGTEVVESSERNKGFELEDFKDNQYEKMF
VPEIEMNDVRNDHSSQGTEKLEIMTDPVQAMLLDMIPSLAMNKVEQPTNRNIEEEKRQVQ
EEKCHVEEEKPPEISNEQPPTTKKKKVSLKAIAGGLLNDW
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgacggagcgaattaagttcagcgtattatgcagcttattaacatggtcacaacgaacc
aaatcgccggcgaagaaacgcgcaaagttccggaagtttctcgattctttctgcaccgat
cgtaactactttcctgcaattcgactcattcttcctaatctcgatcgtgaacgtggttcc
tatggtctcaaagaatccgttctcgctacttcacttatcgatgctattggtttgtccaaa
gactcgcacgacgctcttcgccttatcaattggcggaaaggtggttctaaaaccggtgct
aatgccggtaatttcgcccttgtcgccgccgaggtgctgcagcttaggcaaggtactgct
tccggtggattgacgataaaggagttgaatgacttgcttgatcaactgtcttcgagtgaa
aatagggctgagaagactttggttctttcaacccttatccaaaagacaaatgcacaggaa
atgaaatggattatcatgataatcctgaaagatttgaagctgggatttagtgaaaaaagc
atttttcatgaattccatccagatgctgaagacttgtttaatgttacatgtgacttaaaa
ttagtttgtgaaaagctaagggatcggaaccaacgtcataagaggcaggatattgaaatt
ggaaaagctgtgcgtcctcaattagctaagagagttgctaacgcagctcaagcatggaag
aagcttcatggcaaggaagtggttgctgagtgcaaatttgatggtgatcgcattcaaatt
cataaaaatggaacagagatacatttcttctcaaggaactttattgatcattctgaatat
gcacatggcatgtcggaaatcataattcaaaacattcttgtggatagatgcatacttgat
ggtgaaatgttggtctgggatacatccttgaatcgttttgctgagtttggctctaatcag
gaaatagccaaggcagcaagggatgggcttgagagtaatagacagttatgctacgttgca
tttgacatcctttattttggagatactagtgtaattcaccaaacattgaaggagcggcat
gagattctacgtaaagttgtgaagccattgaaaggtcgtttcgaaattttaatacctaat
ggtggtatcaacagtcatccatcttctggtgaaccatgttggtcatttattgctcataat
gcagatgaagttgaaaggtttttcaaagaaaccattgaaaatagagacgagggaattgta
gtaaaagacctcagctccaaatgggaacctagtgaccgcagtggaaaatggctaaaactg
aagcctgactacgttcaagctggctctgatctggatgtacttatcataggtggctactat
ggttccggacgacgtggtggagaggttgctcagttcttggtgggtcttgcagagcgtcca
tccccaaatacacatcccaaacgatttatctccttttgtagagttggtaccggactttct
gatgatgagcttgaagcagtaataaccaaactaaaaccttacttcagaaagtatccaaag
aagatgcaaccaagcttttatcaagttactcatcattccaaagaaagacctgatgtgtgg
gttgatagccctgaaaaatcaattattctgtctataaccagtgaaatccgaactattgaa
tctgaggtattcgctgcaccttactctctgagatttcctcggattgacagggtgagatat
gataaggcttggcatgaatgtcttgatgtacaatcatttatagaattggtgcaatctagc
aacggtaccacacagagggatccagaatatgggaccaatgacagtaaaccaaaacgcatg
aaatcctctgtaaggggagaaaagaaaaacgtgtccattgttccttctcatttaagtcaa
actgatgtttccggtgttaagggaggttccttaatgttttcaaatatgatgttctacttt
gttaatgtccctccatctcattctctcgagtcgttccataaattagttgcagagaatggc
ggcactttctcaatgaatttgaataactcagtcacccattgtgttgcagcagacaacaaa
gggtttaaatttgaagctgcaaaacgtcgtggtgatgtcattcattatacttgggtattg
gattgctatgcacaaaagaagctcatccccttacagtcgaagtacttcctcttcgtatct
gaactgaccaagaagaagttacaagaagaaattgacgagttctcggactcttactacttg
gatcttgatcttcgagacataaaacagctcttaagcaatattaataggtcagaagatgtc
agtactgtcgaccattacaggaaaaaatactgcccaaaggacaagtggtctgtcttcaat
ggatgctccatttatttccacaccacaatgccatcattgaaagaagattggcaaatttta
ttgggactttcttcaaagagattcaagcttgaagttctcatgggtggtgggaaagtcacc
tctaatcttaaatctgcaactcatgtggtggccttgtttgtaccaagttttcataccaac
tatgatgacgaaatacatagtagtagttttacttcagttgagagaaagcttctcggtagc
aagaagttgcatatagttaattccaagtggttagaagattgtttgaatagttgccaaaga
ttatcagaagacacttatagcttgaagccttatggaatagaagaatcaactgctgaggat
agtgaacatgatgtggcggcagatgttcatctggttgaagataatgtaagagaccgaaat
gaatctttctccaacaagggaagtaagcagagtagtgccaaagctgcttctcaagacagt
ttggctttagcatcacaagagaagcgtggcccaaggaaacgaggaagacctgcgggcaca
ggtattaaaaaaataaaaacagacagaaaccaggctcgaagagcacgatcgcaaattgcg
aaaaaacgtgctaaaataagtgaatatgaatcagatgaaagtgattctcttgatataaga
ccatatgagaaagaggctgacattacagaaggaagtcttgattttcacaatgaacattcg
aaaccacatgagactgagaaaactcataatgtccaaggtactgaagtggtagaaagttct
gaacgaaacaagggattcgagctagaggatttcaaggacaaccaatatgaaaagatgttt
gttcccgaaattgaaatgaatgacgtgcgcaatgaccatagtagtcaggggactgagaaa
cttgaaattatgactgatcctgtgcaggcaatgttacttgacatgattcctagccttgcc
atgaacaaagttgagcaacctacgaatcgtaatattgaggaagagaaacgccaggttcag
gaagagaaatgtcatgttgaggaagagaagccaccagaaatctccaacgaacagcctccg
actacaaagaaaaagaaagttagcttaaaggccatcgccggtggtctgctcaatgattgg
tag
DBGET
integrated database retrieval system
