Trifolium pratense (red clover): 123887628
Help
Entry
123887628 CDS
T08949
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123887628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123887628
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123887628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_15
AAA_29
AAA
AAA_23
Arf
ORC-CDC6-like
AAA_28
Zeta_toxin
AAA_30
Motif
Other DBs
NCBI-GeneID:
123887628
NCBI-ProteinID:
XP_045792856
LinkDB
All DBs
Position
LG1:complement(12392833..12396161)
Genome browser
AA seq
334 aa
AA seq
DB search
MSANNGNSVPKPLTVEIKELKFTYPGIDGHPPPGSKPLIEHFSLNLFSGDRCLLVGSNGA
GKTTILKILGGKHMVEPEMVRVLGRSAFHDTALSSSGDLCYLGGEWRRDVAFAGFEVPIQ
MDISAEKMIFGVAGIDPERRAELIKVLDINLSWRLHKVSDGQRRRVQICMGLLKPFKVLL
LDEITVDLDVLARADLLKFLKKECDERGATIIYATHIFDGLEDWPTNIVYVAHGRLQLAL
PIEKVRETSKLSLMRTVEAWLRKERDEDRRIRKEKKAAGLPEFEKQVEGSRVVGGDPARA
SVRVTNNGWAAGRLHSTVAGEENFLLSSNRVLRG
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgagtgctaataatggaaattcagttccgaagccattaacggttgagatcaaagagctg
aaattcacttatcctggaatcgacggtcatcctcctccgggttctaaacctctcatcgaa
catttctctctcaacctcttctccggtgatcgttgccttctcgtcggatccaatggcgca
ggtaaaaccacaattctgaagatattaggagggaaacacatggtggaacctgaaatggtt
cgtgttcttggtagatcagcttttcatgatactgctttatcatcttctggtgatttgtgt
tatcttggtggtgagtggaggagagatgttgcttttgctggttttgaagttccaatacag
atggacatttctgctgagaaaatgatatttggtgtggctgggattgatcctgaaagaaga
gcagagcttattaaggtattagatatcaatctttcatggagattacataaagtatctgat
ggtcaaagaagaagagtgcaaatttgtatgggtctcctcaaacctttcaaggtccttctt
ctggatgagataacagttgaccttgatgttctagcaagagctgaccttctgaagttttta
aaaaaggaatgtgatgagagaggtgccactattatatatgcaacacatatatttgacggt
cttgaggattggccaacaaatattgtttatgttgctcatggaaggctgcaactagcattg
cccatagagaaagtcagagaaactagcaaactgtcactaatgagaacagtagaagcttgg
ctacggaaggaacgagacgaagatagaagaataaggaaagaaaagaaggctgctggcctt
cctgaatttgaaaagcaagttgagggaagtcgtgtagttgggggggatcctgcacgagct
tcagttcgagttactaataatggctgggccgcaggcaggttacattccaccgttgctggc
gaagaaaatttcctcctaagctcaaaccgagtattgagggggtaa
DBGET
integrated database retrieval system
