KEGG   Trifolium pratense (red clover): 123890873
Entry
123890873         CDS       T08949                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1-like isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    123890873
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tpra03021]
    123890873
Enzymes [BR:tpra01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     123890873
Transcription machinery [BR:tpra03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     123890873
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 123890873
NCBI-ProteinID: XP_045796548
LinkDB
Position
LG6:complement(1915766..1930006)
AA seq 1523 aa
MWSARLPNSMDDHDLTTEHNVPSGRIKAIKFDVLTGEDIEKISTLEIKAPGQVTCSDLGL
PNWSYACTTCGSNNRKSCDGHFGSIKFPLTILHPYFMAEIAEILQKICPACKSIRHELRI
KRAKSLLGFNNQPRGCKYCCGDGMGRYPAMKFRVSSNDFFRRTAIIVEVNDVSLNKKRNL
GRGLPADYWDFILGDAQQEENHVNRRVLSPVQVENLLRGVDPNFIEKFIPSMDLVSLNCF
LVAPNCHRVTEVLHRLPGGYPLSFDNRTRACKKLVDFRGTANELSSRVLDCLRFSKINPD
RTPINIFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLELCEIGIPC
QIAEGLQVSECVNRQNKQSLLYCCELRLLEKGRINVCRKGNPVVLYKKEDLQIGDIFYRP
LVDGDTVLINRPPSIHQHSMIAFTVRVLPITSVVSINPLCCSPLCGDFDGDCLHGYIPQS
VGARVELNELVALDRQLINGQSGTNLLSLCQDSLTAAYLLLEDGVRLNVYQMQQLQMLCD
RKLTPPAIVKASSSNTSFWSGKQLFSILLPFKFDYASPSNDVIVSDGELISCSEASGWIR
DSENNIFQSLVEHFQGKTLDILHGAQKTLCEWLSMTGFSVSLSDLYLSSDSYARKNMMEE
ISYGLREAEKACNFNQLLVDYYCDFLSRSLEENGKFMTVDVDRLNYERELSAAVSQASVD
AFRKVFRNIQSLADKYACKDNTFLAMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRIPR
ELSCAGWNSQKGIHSMEMVSDTLEPGQSFIAHAVVESSFFTGLNPLECFVHSVTNRDSSF
SDNADLPGTLTRRLMFFMRDIYDAYDGSVRNLYGNQLIQFSYDAEEDSACDSYFQEDIIG
GEPVGALSACAVSEAAYSALSQPISLLEASPLLNLKNVLECGSRKRGGDQTLSLYLSEKI
GKKKHGFEYASLEVKNYLERLMFSNIVATVMIIFSPQSCNLGKYSPWVCHFHLDKENVTR
GNFRVHSIIESIYQGYDSLKKNSKFTLPNLKISSNRKCCVDDMAKEAGETSDKEKDSQDC
ITVTIVEDSKNSLQLDALRNIMIPLLLRTAIKGFSEIKKVDILWKDRSKVSNSFNGSSGE
LYLRVTMASDNDSGTFWGSLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHYLHN
LSAATSDTGKSILPKHLRLVANSLSASGEFVGLNAKGMARQRKHASVSSPFVQACFSNPG
SSFLKAAKSGVMDNLQGNLDALAWGNCLPMGTSGQFDIIYSEKVQELDKSVDVYGLLETS
FDQMEQEIETPQSQKYSSIKCNKRGGYNPKEPKQWKSAVRSFITVNDIQKLTTASRFILN
KYPIDEILSEKDRLTIMKVLHFHPCKNEKFGSGPQDIKVGWHPEFTDRRCFFIIRKDGTV
EDFSYRKCILGALDIVDPEKSKIQKNKWSGNNEMEAKKWSGSDEMEAKKWSGNYDKEAKK
WSRNYDKEAKKWSGNNDIEVTGI
NT seq 4572 nt   +upstreamnt  +downstreamnt
atgtggagtgcaaggttaccaaattccatggatgatcatgacctcactacagagcacaat
gtgccatctggtcgtataaaagcgataaaatttgatgttttaactggagaagatatagag
aaaatctccaccttggagataaaagcacctggacaggtcacatgttctgatttgggactt
ccaaattggtcttatgcgtgcacgacatgtggttcaaacaatagaaagtcctgcgacggt
cactttggatcgataaaatttcctcttaccatcttacatccatacttcatggcagagatt
gcagagatcttgcaaaagatttgccctgcatgtaaatctattcgacatgaattacggatc
aagcgtgctaaatcactccttggattcaataatcaacccagaggttgcaaatattgttgt
ggtgatggtatgggtcgttatcctgccatgaaattcagagtttcatccaatgatttcttc
agaagaactgcaattattgttgaagtaaatgatgtatctttaaataagaaaagaaatttg
gggcgaggattgccagctgattattgggatttcatccttggagatgctcaacaagaagaa
aatcatgtaaatagaagggttttatcacctgttcaggttgagaatttattgcgtggtgtt
gatccgaacttcattgaaaaatttattccaagcatggatttggttagcctcaattgcttc
cttgtggcaccgaattgtcatcgtgtgacagaagttcttcaccgacttcctgggggatat
ccattgagttttgataataggaccagggcttgcaagaaattggttgatttcaggggtaca
gcaaatgaattaagttctcgtgttttggattgcctaaggttttccaagataaatcccgat
agaacacctattaatatttttactgagttgcaacaaagaaaggttggagaaaatgcttgc
aattcttctggtttaagatggatgaaagatgtcgttcttggaaaacgcaacgactgttca
ttccgtacggtggttgttggtgatccagaccttgagctttgtgaaatcggcataccttgt
caaattgcagaaggtttgcaggtttcagagtgcgtgaataggcagaataagcaaagttta
ctttattgttgtgagttgcgtttgttagagaagggacggataaatgtttgcaggaagggt
aatccagttgttctgtataaaaaagaagatttacagataggagacatattttatcggcct
cttgttgatggagacacagtgttgataaataggcctccttccatacatcaacattctatg
attgctttcacggttagggttcttccaattacttctgtagtttctattaacccactctgt
tgttcacctctttgtggggattttgatggtgattgccttcatgggtatattccacaatct
gttggtgcaagagtggagcttaatgagcttgttgctttggataggcaactgattaatggg
caaagtggtacaaatctgctttcactttgtcaggatagtttaactgctgcatatttgctg
ttggaagatggggtccgtttgaatgtttaccaaatgcagcagcttcaaatgctttgcgat
agaaaattaacacctcctgcaattgtcaaagcatcttcaagcaatacctcattttggagt
ggcaagcaattgttcagcatactcttgccttttaagtttgactatgcttccccttcaaat
gatgttatagttagtgacggggagctgatatcttgttctgaggcttctgggtggatacgt
gattcagagaacaacattttccaaagtcttgtggaacattttcaagggaagactttggat
atattgcatggtgcacagaaaactctttgtgagtggttgtctatgacaggtttcagcgtt
tccctttcagatttgtacctttcttctgattcttatgcgcggaaaaacatgatggaggaa
atctcctatggcttacgagaagcagagaaggcttgtaatttcaatcagttattggtagat
tattattgtgattttctttcaagaagtctagaagagaatggaaaatttatgactgtggac
gtagatcgtcttaattatgaaagagaattatctgctgctgtaagtcaagcgtcagttgat
gcttttagaaaagtatttcgcaatattcagagtttagcagataaatatgcgtgcaaggac
aatactttccttgctatgtttaaggctggaagcaagggtaatttactgaaattagtgcaa
cattccatgtgccttgggctgcaacattctctggtccggttatcgtacagaattccccgt
gaactctcatgtgctggttggaacagtcaaaaggggattcattcgatggagatggtttct
gatactcttgaaccgggccagtctttcattgctcatgctgtggttgaaagctcttttttc
acagggttgaatccacttgaatgttttgttcattcagtgacaaatcgtgatagctctttc
agtgacaatgcagaccttcctgggacattgaccagaagacttatgtttttcatgcgtgat
atctatgatgcatatgatggatcagtgagaaatttatatggtaatcaacttattcagttt
tcttatgatgctgaagaggattcagcttgtgatagctattttcaagaggatattataggc
ggtgaaccagtcggagcgctttctgcttgtgcagtttccgaggccgcatatagtgctttg
agtcaacctattagtctacttgaagcatcacctttactgaatttaaaaaatgttctggag
tgtggttcaaggaaaagagggggtgaccagaccttatctttatatttgtctgagaaaatt
ggtaaaaagaaacatgggtttgaatatgcatctctagaagttaagaattatttggaaaga
ttgatgttctcaaacattgttgctactgtcatgataatattcagcccacagtcttgcaat
ctcggaaaatacagtccttgggtttgccattttcatttagacaaggaaaatgtaacaaga
ggaaatttcagagtgcattctatcattgagtctatttaccagggatatgactccttaaaa
aaaaactcaaaattcactcttcccaatttgaaaatatcaagcaacaggaaatgttgtgta
gatgacatggctaaggaagctggagaaacctctgataaggaaaaagacagtcaagattgc
atcaccgtaacaattgttgaagattctaagaattctctacagctggatgctcttcggaat
ataatgatacctttgcttctgcgaacagctataaaaggattttcggagatcaagaaggtt
gacattctctggaaggatcggtcaaaagtatcaaattcttttaatggttcttctggtgaa
ctatacttgagggttactatggccagtgacaatgacagcggtacattctggggttcactg
ataaatcactgtcacagaataatgccgttgattgactggacacgaagtcatcccgataac
attcaccatttctgctcagcctttggaatcgatgcagggtggcagcattatctgcataat
ttatcagctgcaacatccgatactggcaagtcgatccttcctaagcatctgcgtctggtt
gccaatagtctttctgctagtggagagtttgtgggattaaatgctaaaggcatggcacgg
caaagaaaacatgcatctgtttcatcgccctttgtgcaagcatgcttttctaatcctggc
agttcctttttaaaagctgcgaagtctggagtcatggataatctccagggcaatctagat
gcattggcttggggaaactgtcttcccatgggtacaagtggacagtttgatatcatatac
tcagagaaggtccaagagcttgataagtctgtagatgtgtatggcctgctagagaccagt
tttgatcagatggaacaagagattgagacccctcaatcgcaaaaatattcatccattaaa
tgcaataaaagaggtggttacaacccaaaagagcctaagcagtggaaaagcgctgtaaga
agttttataacagtaaacgatattcagaagcttacaactgcatcaaggttcatactgaac
aagtatccaattgatgagatacttagtgagaaggacaggttaaccataatgaaggttttg
cattttcatccttgtaaaaatgagaagtttggctctggaccacaagacataaaggttgga
tggcatcccgagtttacggatagacgttgtttttttataatacgaaaggatggaactgtt
gaagatttttcataccgcaaatgcattcttggtgctcttgatattgttgatccagaaaaa
tcaaagatccaaaagaataaatggtcgggaaataatgaaatggaagctaaaaaatggtct
ggaagtgatgaaatggaagctaaaaaatggtcgggaaattatgacaaggaagccaaaaaa
tggtcgagaaattatgacaaggaagccaaaaaatggtcaggcaataatgacattgaagtg
actggcatttga

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