Trifolium pratense (red clover): 123891011
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Entry
123891011 CDS
T08949
Name
(RefSeq) transcription factor PIF3-like isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra04075
Plant hormone signal transduction
tpra04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
123891011
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
123891011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tpra03000
]
123891011
Transcription factors [BR:
tpra03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
123891011
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HLH
Tom22
Motif
Other DBs
NCBI-GeneID:
123891011
NCBI-ProteinID:
XP_045796744
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All DBs
Position
LG6:3014121..3018169
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AA seq
722 aa
AA seq
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MMPLHELYNMSKEKVDHKEMNNSCAHDQSSVPKNDLFKLVLENGQISVQGQSSSISNRGK
KSSSCKSLPSHTLRGHGKDIGQHGNETNTRMKKFEDLDNGNLNEILTRNVSSNHDDDLMM
PWLNYAMDENSLQHDYNYSFLHELSGVNTNDFPASNKFSLLDRGSNCIQVFSDSHKQGIL
CKGSSVAAATEEFETFGLKNSNTQLYTASRLHQCQLSLENDSKRNANQHAPCEEISRIPS
SSTIMNFTHFAKPVATVKANLHNIGLSSSRSENLGIKNKDEAAIDISPFESTKVHLSGDC
PRNSAIHYQHSVEPSRVDLKSLEPRSLEQNAGVSTPACKEDVFKVEQTSNQVLGESGRKG
QEAVEKCMEQTVVTSSVCSDNGAYRGSDDTNKNLKRKNLDSEDSEWNSEDVEDESIGVKR
TAHGRGGIGSKRNRSAEVHNLSERRRRDRINERMRALQELIPNCNKQIILEFVNTKAQLL
FGGFQLSILNLNMKIFHFHNKNSRDKASMLDEAIEYLKTLQLQLQIMSMGGGGLYMPMML
PAGMQHMHAAHMSPFSPMNIGMQMGLGVPQFQGTHLPVAHTSGLAALHGMSRPNHQMFGN
NLGTHLPMPCAPMFSYPGESVMNSSAVGLNPSGTAGLMETVELVSTPKLMDPMPNVSSQV
MQNNNGCNSTNQVSIQGKGETRTGGLEQSNLIIDSGHALSINDKGAVNPRKEDNLVIDKS
HE
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgatgccactgcatgagttatacaacatgtctaaagagaaagttgatcataaagagatg
aacaattcttgtgcacatgatcaatcttctgtacccaaaaatgatttgtttaagctggtt
ttggaaaatggtcagatttcagtgcagggtcaatctagttccatttccaatagaggtaaa
aagagttcatcttgtaagagtttgccatctcatactcttaggggtcatggtaaagatata
ggacaacatggtaatgaaacaaatacaaggatgaaaaagtttgaggatttagataatggt
aatttgaatgaaattcttacaaggaatgtttcttcaaatcatgatgatgatttgatgatg
ccttggttgaattatgcaatggatgaaaactctttacaacatgactataattatagtttc
ttacatgaactttctggtgtcaacacaaatgattttcctgcctcaaataaattttctttg
cttgatagaggaagtaattgtattcaagtatttagtgattctcataaacaagggattctt
tgcaagggttcttcagttgcagctgcaactgaagaatttgagacatttggactaaaaaat
agcaacactcagttatacacggcgtcacggttgcatcaatgtcaactttcacttgaaaat
gattcaaaaaggaatgcaaaccagcatgcaccttgtgaagaaatctctcgtattccatct
tcatcaaccataatgaatttcacccattttgcaaaacctgttgctactgtgaaggctaat
cttcacaacattggattgtcttcatcgagatcagaaaatttaggaataaagaacaaagat
gaagctgcaatagatatcagtccttttgaatcaacaaaagttcatttaagtggagattgt
ccaagaaattctgccatacactatcagcatagtgtggagccatccagggttgatttgaaa
tctttggagccgagatctcttgaacaaaatgccggtgtttctacacctgcttgcaaagaa
gatgtgttcaaggttgagcaaacttctaatcaagttcttggtgagagtggcagaaaaggt
caagaagctgttgaaaaatgtatggagcaaacagtagtaacttcctctgtttgctctgac
aatggcgcatatagaggttcagatgacacaaataaaaatttgaagcgaaaaaatctagac
tccgaggattctgagtggaatagtgaagatgttgaggatgaatcaattggtgttaaaagg
acagctcatggacgaggaggtatcggctcaaagagaaaccgttcagctgaagtgcacaat
ctatctgaaaggagacgaagagacaggatcaatgagaggatgcgtgcattgcaagagctc
ataccgaattgcaataagcaaatcatattggaatttgtgaatactaaagctcaacttttg
tttggcgggtttcaactttcaatcctcaacttgaatatgaaaatcttccactttcataac
aaaaatagcagagataaagcttcaatgctggatgaggcaattgagtatcttaaaacgctt
caactccaactgcaaattatgtcaatgggaggtggtggcttatacatgcctatgatgtta
cctgcaggaatgcaacacatgcatgcagcacacatgtctcccttttccccgatgaatatt
ggcatgcagatggggttgggggtgcctcaatttcaaggaactcaccttcctgttgcgcat
acatctggacttgctgctttacatgggatgtctagaccaaatcatcaaatgtttgggaat
aacctcggaactcatctaccaatgccatgtgctccaatgttttcttatcctggagagtct
gttatgaactcatcagctgtaggattaaatcccagtggaacagcaggactaatggaaact
gtggagttggtttcaacacctaagttaatggatccaatgccaaatgtgagctcacaagtt
atgcaaaacaacaatggatgtaactcaacaaatcaagtttctatccagggtaagggtgaa
acaagaactggtggactcgaacaatcaaatttgataattgatagtggtcatgccttgtcg
ataaatgacaaaggagctgttaatcctcgtaaagaagacaaccttgtgattgataaatct
cacgagtaa
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