Trifolium pratense (red clover): 123902210
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Entry
123902210 CDS
T08949
Name
(RefSeq) transcription factor PIF3-like isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra04075
Plant hormone signal transduction
tpra04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
123902210
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
123902210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tpra03000
]
123902210
Transcription factors [BR:
tpra03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
123902210
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GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
123902210
NCBI-ProteinID:
XP_045807835
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Position
LG1:complement(26347528..26352235)
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AA seq
716 aa
AA seq
DB search
MPLYELYRLARENLGNETNSTSVADQPSSPENDFFELVWESGQISSQGQSSRGTRKSPSC
RSLPSHCLPSHSPRGRDKDVGGGYGTNNNPKTGKFCDLDSGLNEIPMSVPSREVDEMMPW
LDYTMDGSFQTEYGSDFLHELTENDDLPSSNNFTLLEKRSNGNQMFRDSHKNSAEQMNVS
KDSSAEQVETARHKVCTSQLYPPSSNQCQTSFETVRSGASNITENKNANNGNQGVPYSEN
YHIPSSSTDFSSLKVQKQDPILPVNVSNVMNFSHFARPAAIVRANLQNIGMKSGLNSASA
RSDSMGIKNKGEASTSTNPAESTLVNSSGECSKELEMRCHKVVEKSKADLKPLQPKSLEL
NTLASKQSEPACKENGIKNDQRSNQVLGDGGTKGQTGAEKGMETAVASSSICSGNGADRG
SDDQNRDLKRKSRDTEDSECHSEDVEDESVGVKKGGSGRGVAGSKRSRAAEVHNLSERRR
RDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGLYMPQMMLPGG
MQHMHAPHMAAFSPMGIGMHMGLGMGYGMGMPDMNGGSSRFPMMQMPPQMQGTHIPVAHM
SGPSAIHGMARSNPQGFGLPGQGASMPMPRGHGFPFPGGPLMNSAYGSTGTVETVNPASA
SGSRDPMQNVDSQIKQNTGGRDSTSQIPNQSALVHNGGHDSVADDSGAANPGNITL
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgcctctttatgagttataccgtttggctagagagaatcttggtaatgagactaatagc
acaagtgtagctgatcaaccttcctcgcctgagaatgatttttttgagctggtttgggag
agtggtcagatttcaagccaaggtcaatcaagtagaggtactagaaagagtccatcttgt
aggagtttaccatctcactgcttaccatctcatagtcctagaggtcgagataaagacgta
ggaggaggatatggtactaataacaatccgaagacaggaaaattttgtgatttagattct
ggattgaatgagattccaatgtcggtgccatctcgagaagtagatgaaatgatgccttgg
ttggattatacgatggatggttcttttcaaaccgaatatggttctgatttcttacatgaa
ctcacggagaatgatgaccttccttcctcgaataattttactctattggagaaaaggagt
aacggtaatcagatgtttagggactctcataaaaattctgcagaacagatgaatgtttct
aaggattcttcagctgaacaggttgagactgcaagacataaagtttgcacaagtcagtta
tatccgccatcatcgaatcagtgtcaaacatcatttgaaactgttagatccggggcatcg
aatataactgagaataaaaatgcaaataatggtaaccagggtgtgccttacagtgaaaat
tatcatattccatcttcctcgaccgatttttctagcttaaaagtgcagaagcaagatcct
atattgcctgtcaatgtttccaatgtaatgaatttttcccatttcgcaaggccggctgct
attgtgagagctaatcttcagaacatcggcatgaagtctggtttgaattcagcttcagca
agatcagatagtatgggaattaagaataaaggtgaagcttcgactagcaccaatcctgcc
gagtcaactcttgttaattcaagcggtgaatgttcaaaggaactggaaatgcgttgtcat
aaggtggtggaaaaatctaaggctgatttgaaacctttgcagccgaaatctcttgaattg
aacactttagcttctaaacaatcggagcctgcttgcaaagagaatggaattaagaatgat
caacgttccaatcaagttcttggtgacggtggcactaaaggacaaacaggtgctgaaaaa
ggtatggagacggccgtagcctcttcttctatttgctctggtaatggtgcagacagaggc
tcggatgatcagaatcgagatttgaaacggaaaagtagagacaccgaggactctgaatgt
catagtgaagatgtggaggatgaatcagtaggtgttaaaaagggaggttccggacgagga
gttgcaggttccaaaagaagtcgcgctgctgaagtgcataatctatccgaaaggcggcga
agagacaggataaatgagaagatgcgtgcattacaagaactcatacctaattgcaataag
gtggataaagcttctatgctggatgaggcaattgagtatctaaaaacacttcagctccaa
gttcaaatgatgtcaatgggagctggtttatatatgcctcaaatgatgttacctggtgga
atgcagcacatgcatgcaccacacatggctgcattttcaccgatgggcattggcatgcat
atgggattaggtatgggttatggaatgggaatgcctgacatgaacggcggatcttctaga
tttccaatgatgcagatgcctcctcagatgcaaggaactcatattcctgttgcacatatg
tccggaccttctgctatacacgggatggccagatcaaatcctcaagggtttggacttccg
ggtcagggagcttccatgccaatgccacgtggtcatggatttccttttccaggagggcct
cttatgaactctgcgtatggatccacaggaactgttgaaactgtgaatccagcttcagca
tctggctcaagagatccaatgcaaaatgtggactcacaaattaagcaaaacaccggtggc
cgtgactctacaagccagattcctaatcagtcggctttggtgcataatggtggtcatgac
tcagtggctgatgacagtggagctgctaatcctggcaatatcactttgtga
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