Trifolium pratense (red clover): 123902938
Help
Entry
123902938 CDS
T08949
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein GMI1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tpra03036
]
123902938
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123902938
Chromosome and associated proteins [BR:
tpra03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
123902938
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
123902938
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c_3
SMCHD1_S5
ARA70
BicD
Motif
Other DBs
NCBI-GeneID:
123902938
NCBI-ProteinID:
XP_045808732
LinkDB
All DBs
Position
LG1:36722644..36738454
Genome browser
AA seq
1480 aa
AA seq
DB search
MERGVNGNPKKRKMGERDGDDDDAGVRKRRMFKILLPNETSVDLTVPNDENKLSVGDFIN
LVQKKYLEVWKKSESMRKKRDINWKSSGLYLEDRNDNKIRNVIDLNNFTPYKRHILRLND
GSANVVETFENMWDLTPDTQLLLELPEEYTFEAAIADLIDNALQAVWQNETNNRKLVCVQ
VTKNKIIIFDNGPGMDDSNENSILKWGKMGASLHRLSKSDAIGGQPPYLMPYFGMFGYGG
PVASMHLGNRTCVSSKTKKVKKVYQLYLDREDLIKQSNPEATWKATGGIREPSRNEIDNS
QGSFTKVEIFEPKLKDVDINKLRCHLKDIYFPYIQNDDLSAKGKTITPIQFQVNCVDLTE
VQGGEIATTNLHSCNGPEFVLQLHMKRLQDHGSREFQEANARLRFVYFPFTEGKESIDRI
LENLTADGYMIRESFETFSRVSVRRLGRLLPDARWTLLPFMDYRNKRETYKAAILKRCSM
RVKCYVETDAGFKPTQSKTDLAHQNPFTIALKNLGSKISDKESADVSVEITRDTKVLTPL
QLEKEYQDWILRMHNDYDEGAYAGDCMDKPVILLNPPNKKALGLFHDVIRVHRVLKRKDK
TWSREQRIKVLRGACSGCHSNNVYATIEYFLIEKFEGETGGDARVLCRPIGIPEENGCSL
DVSNEEDPVLDIGSSLSLPMTVIYDEKLVPVETIEWENRLKKLKQKSPACTPSPHHYKGK
QADVVDSISRSFDKRVTAKPSHCAVAYKLLTDDQCQELDVRVGSTFPTLAIACYDIHGNQ
APFQEIPKDLTIRLQAAKDLYFNVRGRNFALSVDKMSLKIMDAMVKSNELDKISPTYRTT
LMITSESVPMSLSFPCRVFPSSLKHVDLKPEIREDQLLPGFIFKELMLEMFDKYGNHVSE
GIEVDIVLAGFEILNRCSTLYKVDDKGKINLSGLLKLTAGYGENASISVIFQNITIFKQE
FSIAQRSLRIASEVPGCCAAGSQLENVEFEIVNIDGEVDTKIHQDDQYGQFHMLTIKSDL
LNAENSMRYTFKHGRCTIPYIRVPDIEGTFCFEASHSKYTDLCLAVKVQVIKMPNAKDDA
QFLSPEKNIFPMQELSPLNCGNDLMMSVINSTNKKLQDIFQLGEKIKSLEENHNCYLNLK
TETEKQILSLQGSLSHLGNIDSLFTDTKEEMTTKIKSMENTAASVLCSLSNQQTPLLKDI
IGVVALLGSVQSLELSRMLAEFLGEDKMLGVICRSVETAIALEKYKQNGEIDYVCALHAE
AADLGKAISKRFLTMCFENIRPCEYLPQKNDSQRKLALPDPKLQNGRTPAGFMGYAVNMI
DLDTRHLQTSTKYGYGLRQTVLFRLFKKLQVYETRDSMVAALQCIEEDGAVSVDGGIIRE
MGTLSLGHGNPSIYFPCANELDNSPQTKEILSQIKVKKEELRDIEEYLKKSNKCIQKNKK
KYQKKDKEYKILVATTVQPLSEVPVPKPEFDWETLVNLGD
NT seq
4443 nt
NT seq
+upstream
nt +downstream
nt
atggaaaggggggttaatggcaaccctaaaaagcggaaaatgggggaaagggacggagac
gatgatgatgctggagttcggaaaaggagaatgtttaagattttgttgccgaatgaaact
agtgtagatttgacagtacctaatgatgaaaataaattgtctgttggggattttattaat
ttggttcaaaagaagtatttggaagtttggaagaaaagtgaatctatgaggaaaaaaagg
gatatcaattggaagagtagtggtttgtatcttgaagatcgtaatgataataagattagg
aatgttattgatttaaataatttcacgccttacaagcgtcacattttacgccttaatgat
gggagtgccaatgttgttgaaacttttgagaatatgtgggacttgacgccggatacacag
ttgctactggagcttcctgaagaatatacttttgaagcggctattgctgacttgattgat
aatgctttgcaggctgtgtggcaaaatgagacaaataataggaagctcgtttgtgtacag
gttaccaagaataagattataattttcgacaatggtcctggaatggatgactccaatgag
aattccatattaaaatggggaaagatgggtgcctcacttcacagattatcaaaatcagat
gctattggtggacaacccccgtacttaatgccttattttgggatgttcggatatggtgga
cctgtagcatctatgcatctagggaatcgtacttgtgtttcgtccaaaacaaaaaaagta
aagaaagtctaccagttatatcttgacagagaggatttaataaaacaatctaaccctgaa
gccacatggaaggcgacgggtggcataagggaaccttcaaggaatgaaatcgataattct
caaggcagctttacaaaggttgaaatttttgagccaaaactaaaagatgttgatattaac
aaactccggtgccacctcaaagatatatatttcccctatattcagaatgacgacttgtct
gccaaagggaaaactattacaccaattcagttccaggtcaactgtgttgatctgacagag
gttcaaggcggggagattgcaactaccaatttgcattcttgcaatggtcctgaatttgtt
ctgcagcttcatatgaaacgtttacaggaccacggttcaagggaattccaagaagcaaat
gcacgacttagatttgtatatttccctttcacagagggaaaagagagtattgacaggatt
ttggaaaatttaactgctgacggttatatgataagggaaagctttgaaacctttagtcgc
gtttctgttaggcggcttggtcgtctccttccagatgctcgctggactttacttcctttt
atggactataggaacaaaagggagacttataaggcagcgatattgaagagatgttccatg
agggttaaatgctatgttgaaactgatgctggttttaagcctactcagtcaaagacggat
ttagctcaccaaaatccttttaccattgctttaaagaacttgggcagtaaaatttcagac
aaagagtccgcagatgtttctgttgagattaccagggatacaaaagtgttaactccttta
cagctagaaaaggagtaccaggattggatattacgtatgcacaatgattatgatgaagga
gcttatgccggtgactgtatggataaaccggttatacttctcaatccaccgaacaagaaa
gcacttggcctttttcatgatgtcatcagagttcatcgggttctgaagagaaaggacaag
acatggagtcgtgaacagagaattaaagtgttaaggggagcatgttcagggtgtcacagt
aacaatgtttatgcaaccatagagtactttttgattgaaaaatttgaaggagagacgggt
ggagatgctcgggtcctatgcaggccaatcggtatcccggaagaaaatggatgctccctt
gatgtgagtaatgaagaagatcccgtattagatattggtagctctttgtctttacctatg
accgtgatctacgacgaaaagcttgtacctgttgaaactattgaatgggaaaatcgactt
aaaaagttaaaacagaaatctcctgcttgtactccgagtccacaccattataaagggaag
caggctgatgtggtggactcaatcagtagaagttttgacaaaagggtgacagcgaaacct
tctcattgtgctgtggcgtacaaacttctaactgatgaccaatgtcaagagcttgatgtg
agggttggttctacctttccaaccttagccattgcatgttatgacatccatggtaatcaa
gcaccttttcaagaaattccgaaggatctgaccattcgacttcaggcggcaaaggacttg
tacttcaatgtgcgaggaagaaattttgctctttcagttgacaaaatgtctttaaaaatc
atggatgcaatggttaaaagtaatgaattagataagataagtcctacctatagaactact
ttgatgattacttcagaaagtgttccaatgtcactatcttttccgtgtcgagtttttcct
agttctctcaaacatgttgacctaaagcctgagataagagaagaccaactacttccagga
ttcattttcaaggagttaatgttggagatgtttgataaatatggaaaccatgtgtctgaa
ggcattgaggttgatattgttttggctggattcgaaatactaaatcgttgcagtacttta
tacaaggttgatgataaaggaaaaattaatcttagtggtctgctaaagttaactgcaggt
tatggagaaaatgcatccatatctgtcatttttcagaatataacaattttcaagcaggag
ttttcaattgcgcaaagaagcttgagaattgcatcagaggtgcctggttgttgtgctgct
ggtagtcagctagaaaacgttgaatttgaaattgtaaatattgatggagaagtagataca
aagattcaccaggacgatcaatatggccagtttcatatgctcacaattaagtcagacctt
ctcaatgcagagaactctatgcggtacactttcaagcatggacgctgtacaattccatac
atccgtgttccagacattgaggggactttttgctttgaagcttcacattcaaaatataca
gatctatgtctggctgtaaaggttcaagtcatcaaaatgccaaatgcaaaagatgatgca
caatttctatccccggaaaagaatatttttccaatgcaggaactatcaccacttaattgt
ggaaatgacttaatgatgtctgtcataaatagtactaacaagaaacttcaagatattttt
caacttggtgagaaaattaaaagcttagaagaaaatcataattgttatcttaatctaaag
actgagaccgagaaacagatattgagtctgcaaggttctctctctcatctaggcaacatt
gattccttattcaccgacaccaaagaggaaatgactacaaaaatcaaaagcatggaaaac
acagcagcttctgtcctatgtagtctttctaatcaacagactcctctcttgaaagatata
attggggttgttgccctccttggttccgttcagagtcttgagcttagcagaatgttagct
gaatttcttggtgaagataaaatgctgggtgttatttgtcgatctgttgagactgcaatt
gctcttgaaaaatataaacaaaatggagaaatcgattatgtgtgtgctttgcatgctgaa
gcagctgatcttggtaaagcgataagcaagcgttttcttactatgtgctttgaaaatata
aggccatgcgaatatttgccacaaaaaaatgactctcagaggaagctagcattgcctgat
cccaagttacaaaatgggagaacgccagccggctttatgggttatgcagttaatatgatt
gatctggatacccgtcacctgcagacaagcacaaaatatggttacgggcttcgccagacc
gtgctatttaggctgttcaagaagctccaagtttacgaaacaagagatagtatggtggct
gctcttcaatgtatagaggaggatggtgcggtatccgtagatggtggaattataagagaa
atgggaactctttctcttggtcatgggaatccttccatatactttccttgtgctaacgag
ttggacaattctccacaaactaaggaaatcttgagtcagattaaagtaaagaaagaagag
ctgcgggatattgaagaataccttaaaaagtcaaataagtgtatccagaagaataaaaaa
aaatatcagaaaaaggacaaggaatataaaattcttgttgctacaacagttcagcctttg
tccgaggtaccagtaccaaaaccagagtttgattgggaaaccttggtaaacttaggtgat
tga
DBGET
integrated database retrieval system
