Trifolium pratense (red clover): 123903093
Help
Entry
123903093 CDS
T08949
Name
(RefSeq) 5'-3' exoribonuclease 4-like isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
123903093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123903093
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
123903093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
123903093
NCBI-ProteinID:
XP_045808928
LinkDB
All DBs
Position
LG1:14000114..14009903
Genome browser
AA seq
949 aa
AA seq
DB search
MGVPAFYRWLADRYPLSIADVLEDEPTVTDDGVPLPIDASKPNPNGMEFDNLYLDMNGII
HPCFHPDGKAAPATYDDVFKSIFDYVDHLFSLVRPRKLLYLATDGVAPRAKMNQQRSRRF
RAAKDAAEAEAEEERLRKEFTDEGTLLSPKDKPETSDSNVITPGTKFMATLSVALQYYVQ
TRLNRNPAWKDIKVILSDSNVPGEGEHKIMEYIRLQRNVPGFNPNTRHCLYGLDADLIML
SLATHEVHFSILREVITLPGQHDRCFMCGQVGHFAADCHGKPETKTEDGNTAEDCPIHKK
KYQFLNIWVLREYLQYELEIPNPPFVIDFERVVDDFVFLCFFVGNDFLPHMPTLEIREGA
INLLMHIYRKEFTAMGGYLTYAGEVFLDRVEYFIQSVAFHEDQIFQKRVRIQQVAENNEE
MKARARGVMLQEPRPSFSDKVKLGEPGYKERYYVEKFGVSSPEEIDKIKKDIVLKYVEGL
CWVCQYYYNGVCSWKWYYPYHYAPFASDLKDLFDLEIIFSPGEPFKPFDQLMGVLPASSS
NALPEKYRDLMTDPSSPIFHFYPADFEIEMNGKRFAWQGVAKLPFIDERKLLAATRKLED
TLTMQEDEQLRNSVMLNLLYVNRAHDLASHILLYYKVYGQLPIHQRFVSPIDKNASSGGM
NGYLWACERNVLSSIVPSPIDGLPDIESNQVLNITYLNPSRHGHIPKPPDGVVMPKKILE
DTDIKPFPVLWHEDNVDRGQQGRERSQVPGAITGSQLGEAAHRLVKNSLNIKWNNTSHGL
LEQPPHRHTTNRFQSAGPSGYGKYYGENTNSYHGEHNHHGIMARDRYPISSNGGQMDRRN
FRIQDRSRHQEQFQNVKTGFSALTMEEGLRPKPSRLPTSGPPTNIEPRFVQNTGPPRPSP
NWNNKAPINGMYTRRQEAAFGAVPHHKQVKKVYQVKTRSPQETPDCGKQ
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagctttttaccgatggctcgccgaccgttacccactctcgatcgccgac
gtacttgaagatgaaccaaccgtcaccgacgacggtgttccgttacctattgatgcatct
aaacctaatcccaacggaatggagttcgacaacttgtacttggacatgaacggtatcatt
cacccttgttttcaccctgatggcaaggcagcaccagctacatatgatgacgtgtttaag
tcgatatttgattatgttgaccatctattttcgttggttcgtccaaggaagcttctctac
cttgcaactgatggtgttgcaccaagagcaaaaatgaatcaacaacgttctcggcgcttc
cgagctgcaaaagatgcagctgaggctgaagctgaagaggaaaggttgaggaaagaattc
acagatgagggaacacttttgtctcctaaagacaagcctgagacttcagactcaaatgtc
attacccctggtactaaatttatggcaactctgtcagtggctcttcagtattatgtacag
actagattgaaccgcaaccctgcctggaaagatataaaggttatactttctgattcaaat
gttcctggtgagggagaacataaaataatggaatacatccggttacaacgtaatgttcct
ggtttcaatccgaatactcgacattgtttgtatggattggatgctgatttaattatgctc
tccttagctacccatgaggttcacttctcaatattgagggaggtaattactttacctgga
caacatgataggtgttttatgtgtggccaagttggccatttcgcagctgattgtcacggt
aagccggaaactaaaactgaggacggtaatactgctgaggattgcccaattcacaagaaa
aaatatcagtttcttaacatctgggtgcttcgtgaatatttgcaatatgaattggagatt
cccaaccctccttttgtgattgactttgaacgagtagtggatgattttgtatttctgtgc
ttctttgtcggcaatgactttcttcctcatatgccaacattagagatcagggagggagca
ataaatttactgatgcatatatataggaaggaatttactgccatgggtggctatcttact
tatgctggcgaggttttcttagatagagtggaatattttatccaatctgtcgcttttcac
gaagatcaaatctttcagaaacgagttcgaattcagcaggtggcagaaaacaatgaagag
atgaaagctagggcaagaggagtaatgcttcaagagccacgaccctcattttccgacaag
gtcaagttaggggagcctggatacaaggaaaggtattatgttgaaaagtttggcgtatca
agtccggaggagattgataaaattaagaaagatatagttttgaaatatgttgaaggcctt
tgttgggtttgccagtattattataatggtgtatgttcatggaaatggtactacccatat
cattatgctccttttgcttctgatcttaaagatctgtttgatctagaaataatattttcc
cctggagagccattcaaaccatttgatcagcttatgggggtcctacctgcttcaagttca
aatgcactgcctgaaaagtatagggatttgatgaccgatccttcatcacctatttttcac
ttctatcctgctgattttgagattgaaatgaatggaaaacggtttgcatggcagggtgtt
gccaaattgccatttattgatgagaggaaattgctcgctgccacaaggaagcttgaagac
acattaacgatgcaggaagacgaacagcttcgaaatagtgtgatgcttaatttgctttat
gtcaaccgtgcacatgatttggcttcacatattttattgtattacaaagtttatggccaa
ttacctattcatcaaagatttgtttcaccaattgacaaaaatgctagcagtggtgggatg
aatggatatctttgggcatgtgagagaaatgttttgagctctattgtaccttctcccatt
gatggattgccagatatcgagagtaatcaagtcctaaatatcacgtatcttaatccttct
agacatggacacatcccaaaacctcctgatggtgtagtaatgcccaaaaagatattagaa
gacactgatatcaaaccttttccagtactgtggcatgaagacaatgttgatcggggacag
caaggaagggaaaggtcccaagtacctggagcaataactggatctcaattaggagaagca
gctcatcgtcttgtcaagaacagtcttaacattaaatggaataatacatcccatggattg
ttggagcaacctccacatcgccatacaacgaacaggttccaatcagctggaccatctgga
tatggaaagtattatggagagaacacaaacagttatcatggagaacataatcaccacggc
attatggctagagatagatatccaatttcatctaatggtgggcagatggacagacggaat
tttagaatacaagataggtcacgtcatcaagaacagttccaaaatgtgaagactgggttt
tctgctttgacaatggaggaaggattgagacctaagccatcaaggctgccaacttctgga
ccaccaaccaatatagaacctcgatttgtgcagaacacaggtcctccaagaccatctcca
aattggaataacaaagcacctataaatggaatgtatactaggcgtcaagaagctgcattt
ggggcagtacctcatcataagcaggtaaagaaggtttaccaagttaaaacacgttcaccc
caagaaactccagattgtgggaagcaatag
DBGET
integrated database retrieval system
