KEGG   Trifolium pratense (red clover): 123905876
Entry
123905876         CDS       T08949                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1-like isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    123905876
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tpra03021]
    123905876
Enzymes [BR:tpra01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     123905876
Transcription machinery [BR:tpra03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     123905876
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 123905876
NCBI-ProteinID: XP_045811607
LinkDB
Position
LG2:complement(41226320..41240600)
AA seq 1527 aa
MWSAKLPNSMNDQDLTTEHNVPPGRIKAIKFDVLTGEDIEKISTLEINAPGQVTCSDLGL
PNSSYVCTTCGSHDRKSCDGHFGSIKFPFTILHPYFMAEIAEILQKICPACKSIRHELRI
KRAKSLLGFNNQPRGCKYCSGNGMGRYPAMKFRVSSNDFFRRTAIIVEVNDISLNKKRNL
GRGLPADYWDFILGDAQQDENHVNRRVLSPVQVENLLSGVDPNFIEKFIPSMDLVGLSCF
LVAPNCHRVTEVAHRMCGGYPLSFDNRTRACKKLVDFRGTANELSARVLDCLRFSKINPD
RTPINIFTELQQRRVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLELCEIGIPC
QIAEGLQVSECVNRQNKQNLLYCCELRLLEKGQINVRRKGNPVVLYKKEDLQIGDIFYRP
LVDGDTVLINRPPSIHQHSMIAFTVRVLPITSVVSINPLCCSPLCGDFDGDCLHGYIPQS
VGARVELNELVALDRQLINGQSGTNLLSLCQDSLTAAYLLLEDGVRLNVYQMQQLQMLCD
RKLTPPAIVKASSSNTSFWSGKQLFSMLLPSSFKYDFPSNDVVVRDGELISCSEASGWLR
DSENNIFQSLVEHFQGKTLDILHGAQKTLCEWLSMTGFSVSLSDLYLSSDSYARKNMMEE
ISYGLRESEKACNFNQLLVDYYCDFLSRSLEENGKCMTVDVDRLNYERQLSAAISQASVD
AFRQVFRHIQSLADKYACKDNTFLAMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRIPR
ELSCAGWNSEKGNHSMKMFSDTHEPGQSFIAHAVVESSFLTGLNPLECFVHSVTNRDSSF
SDNADLPGTLTRRLMFFMRDLYDAYDGSVRNLYGNQLIQFSYDAEEDSACDSYCREDVIG
GEPVGALSACAVSEAAYSALSQPISLLEASPLLNLKNVLECGSRKRGGDQTLSLYLSDKI
GKTKNGFEYASLEIKNYLERLMFSDIVSTVMIIFSPQSCDLGKYSPWVCHFHLDKENVTR
GNFRVHSIIESIYQGYDSLRKDSKFTLPSLKISSNRKCCVDGMAKEGGQTSDKEKDSQDC
ITVTIVEDSKNSLQLDAVRNIMIPMLLRTAIKGFSEIKKIDILWKDRSKVSNSFHGSSGE
LYLRVTMASDNDSGTFWGSLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHYLHN
LSSATSDTGKSILPKHLRLVANSLSASGEFVGLNAKGMARQRKHASVSSPFVQACFSNPG
SSFLKAAKSGVMDNLQGNLDALAWGNCLPMGTSGQFDIIYSEKVQELDKSVDVYGLLETS
FDQMEQEINTLQSQKYSSSNCNSDFRYKQGGYTRKQPKQWKSAVRSFITVNDILKLTTAS
SFILKKYAIDEILSEKDKLTIMKVLHFHPCKNEKFGSGPQDIKVGLHPIHPDSRCFFIIR
KDGTVEDFSYRKCIIGALDIVDPEQSKIQKSKWSNIDMEAKKWSGSDDMEDKKWSENSDK
EYKKWSRNYDQEAKKWSANDDMEVTGI
NT seq 4584 nt   +upstreamnt  +downstreamnt
atgtggagtgcaaagttaccaaattccatgaatgatcaagacctaactacagagcacaat
gtgccacccggtcgtattaaggctataaaatttgatgttttaactggagaagatatagag
aagatctccaccttggagataaatgcacctggacaggtcacttgttctgatctgggactt
ccaaattcgtcctatgtgtgcacaacatgtggttcacatgatagaaagtcctgtgatggt
cactttggatcaatcaagtttccctttaccatattacatccatacttcatggcagagatt
gcagaaatcttgcaaaagatttgccctgcgtgtaaatctattcgacatgaattacggatc
aagcgtgctaaatcactccttggattcaataatcagccgagaggttgcaaatattgttct
ggtaatggtatgggtcgttatcctgccatgaaattcagagtttcatccaatgatttcttc
aggagaactgcaattattgttgaagtaaatgatatatctttaaataagaaaagaaatttg
gggcgaggattgccagctgattattgggatttcatccttggagatgctcagcaagatgaa
aaccatgtaaatagaagggttttatcacctgttcaggttgagaatttgttgagtggtgtt
gatccgaacttcattgaaaaatttattccaagcatggatttggttggtctcagttgcttc
ctggtggcaccgaattgtcatcgtgtgacagaagttgctcaccgaatgtgcgggggatat
ccattgagttttgataacaggaccagggcttgcaagaaattggttgatttcaggggtaca
gcaaatgagttaagtgctcgtgttttggattgcctgaggttttccaagataaatcctgat
agaacaccaattaatatttttactgagttgcaacaaagaagggttggagaaaatgcctgc
aattcttctggtttaagatggatgaaagatgtcgttcttggaaaacgcaatgactgttca
ttccgtaccgtggttgttggcgatccagacctcgagctttgtgaaattggtataccttgt
caaattgcagaaggtttgcaggtttctgagtgcgtgaataggcagaataaacaaaattta
ctttattgttgtgagctgcgtttgttagagaagggacagataaatgttcgtagaaagggt
aatccagttgttctgtataaaaaagaagatttacagataggagacatattttatcggcct
cttgttgatggagacacagtgttgataaataggcctccttccatacatcaacattctatg
attgctttcacggttagggttcttccaattacttctgtagtttctattaacccactctgt
tgttcacctctttgtggggattttgatggtgattgccttcatgggtatattccacaatct
gttggtgcaagagtggagcttaatgagctggttgctttggataggcaactgattaatggg
caaagtgggacaaatctgctttcactttgtcaggatagtttaactgctgcatatttgctg
ttggaagacggggtccgtttgaatgtttaccaaatgcagcagcttcaaatgctttgcgat
agaaaattaacgcctcctgcaatcgtaaaagcttcttcaagcaatacctcgttttggagt
ggcaagcaattgttcagcatgctgttgccttctagttttaaatatgatttcccttcaaat
gatgttgttgttagggacggggagctgatatcttgttccgaggcttctgggtggttacgt
gattcagagaacaatattttccaaagtcttgtggaacattttcaagggaagactttggat
atattgcatggtgcacagaaaactctttgtgagtggttgtccatgacagggttcagtgtt
tccctctcagatttgtacctttcttccgattcctatgcgcggaaaaacatgatggaggaa
atctcctatggcttacgagaatcagagaaggcttgtaatttcaatcagttattggtagat
tattattgtgattttctttctagaagtctagaagagaatggaaaatgtatgactgtggac
gtagatcgtcttaattatgaaagacagttatctgctgctataagtcaagcttcagttgat
gcttttagacaagtatttcgccatattcagagtttagcagataaatatgcgtgcaaggac
aatactttccttgctatgtttaaggccggaagcaagggtaatttactgaaattagtgcaa
cattccatgtgtcttgggctgcaacattctctggtccgattgtcatacagaattccccgc
gaactctcatgtgctggttggaacagtgaaaaggggaatcattcgatgaagatgttttct
gatactcatgaaccaggccagtctttcattgctcatgctgtggttgaaagctcttttctt
acagggttgaatccacttgaatgttttgttcattcggtgacaaatcgtgatagctctttc
agtgacaatgcagaccttcctgggacattgaccagaagacttatgtttttcatgcgtgat
ttgtatgatgcatatgatggatcagtgagaaacttatatggtaatcaacttattcagttt
tcttatgatgctgaagaggattcagcttgtgatagctattgtcgagaggatgttataggc
ggtgaaccagtcggagcgctttctgcttgtgcagtttctgaggctgcatacagtgctttg
agtcaacctattagtctacttgaagcatcacctttgctgaatttaaaaaatgttttggag
tgtggttcaaggaaaagagggggtgaccagaccttgtccttatatttgtctgacaaaatt
ggtaaaacgaaaaatgggtttgagtatgcatctctagaaattaagaactatttggaaaga
ttgatgttctcagacattgtttctactgtcatgataatattcagtccacagtcttgtgat
ctcggaaaatacagtccttgggtgtgccattttcatttagacaaggaaaatgtaacaaga
ggaaatttcagagtgcattctatcatcgagtctatttaccagggatatgactccttaaga
aaagactcaaaattcactcttcccagtttgaaaatatcaagcaacaggaaatgttgtgta
gatggcatggccaaggaaggtggacaaacctctgataaggaaaaagacagccaagattgc
atcaccgtaacaattgttgaagattctaagaattctctacaactggatgctgttcggaat
ataatgatacctatgcttctgcgaacagctataaaaggattttcggagatcaagaagatt
gacattctctggaaggatcggtcaaaagtatcaaattcttttcatggttcttctggtgaa
ctatacttgagggttacaatggccagcgacaatgacagcggtacattctggggttcactg
ataaatcattgtcacagaataatgccgttgattgactggacacgaagtcatcctgataac
attcaccatttctgctcagcctttggaatcgatgcagggtggcagcattatttgcataat
ttatcatctgcaacatctgatactggcaagtcgatccttcctaagcatctgcgccttgtt
gccaatagtctttcagctagtggagagtttgtgggattaaatgctaaaggcatggcacgg
caaagaaaacatgcatctgtttcatcgcccttcgtgcaagcatgcttttctaatcctggc
agttcctttttaaaagctgcgaagtctggagtcatggataatctgcagggcaatctagat
gcattggcttggggaaactgtctgcccatgggtacaagtggacagtttgatatcatatac
tcagagaaggtacaagagcttgataagtctgtagatgtgtatggcttgctagaaaccagt
tttgaccaaatggaacaagagattaatacccttcaatctcagaaatattcatccagcaac
tgcaactcagactttaggtataaacaaggtggttacacccggaaacagcctaagcagtgg
aaaagcgctgtaagaagtttcataactgtcaatgatattctgaagcttactactgcatca
agcttcatacttaaaaagtatgcaattgatgagatacttagtgagaaggacaagttaacc
ataatgaaggttttgcattttcatccatgtaaaaatgagaagtttggctctggaccacaa
gacataaaggttggattgcatcccatacatccagatagccgttgtttttttataattcga
aaggatgggactgttgaagacttttcctaccggaaatgcattattggtgctcttgatatt
gttgatccggaacagtcaaagatccaaaagagtaaatggtctaatattgacatggaagct
aagaaatggtctggaagtgatgacatggaagataaaaaatggtcggaaaattctgacaaa
gaatataaaaaatggtcaagaaattatgaccaggaagctaagaaatggtcagccaatgat
gacatggaagtgactggcatttga

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