Trifolium pratense (red clover): 123918278
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Entry
123918278 CDS
T08949
Name
(RefSeq) sm-like protein LSM3A
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123918278
09123 Folding, sorting and degradation
03018 RNA degradation
123918278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123918278
03041 Spliceosome [BR:
tpra03041
]
123918278
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123918278
mRNA degradation factors
5'-3' decay
Lsm complex
123918278
Spliceosome [BR:
tpra03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
123918278
Complex C
U2 snRNP components
123918278
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
Glutaredoxin
Motif
Other DBs
NCBI-GeneID:
123918278
NCBI-ProteinID:
XP_045826245
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Position
LG3:complement(1659496..1661947)
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AA seq
98 aa
AA seq
DB search
MAGTEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTSV
EIDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTA
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atggcagggactgaggaagaaagcgcagtgaaggagcctttggatctcataagactcagc
ctcgacgaacgtatctacgtcaaactccgttctgatagagagcttcgtggaaaacttcat
gcttatgatcagcatcttaatatgattctcggtgatgttgaagaaattgttacctctgtt
gaaattgatgatgagacatacgaagaaattgttaggactacaaagcgaacagttcctttc
ttgtttgttaggggagatggggtgatattggtttccccaccactgaggactgcataa
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