Thalassiosira pseudonana: THAPSDRAFT_26806
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Entry
THAPSDRAFT_26806 CDS
T01078
Name
(RefSeq) U5 small nuclear ribonucleoprotein, U5 snRNP
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
tps
Thalassiosira pseudonana
Pathway
tps03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
THAPSDRAFT_26806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tps03041
]
THAPSDRAFT_26806
Spliceosome [BR:
tps03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
THAPSDRAFT_26806
Complex C
U5 SnRNP specific factors
THAPSDRAFT_26806
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
MMR_HSR1
SRPRB
Roc
TniB
EF-G_D2
AAA_22
Septin
Motif
Other DBs
NCBI-GeneID:
7447643
NCBI-ProteinID:
XP_002286996
JGI:
26806
UniProt:
B8BS09
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Position
1:complement(2495115..2498852)
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AA seq
905 aa
AA seq
DB search
MELEDPIVEPVKKQTFSLMRDENEEREAYLASLVANETTRTRRCLALVGHLHTGKTSLVD
LFIEQTKVPTTSANNNGLTDTLQSEQDRQMSIKSCPITLCLPDTRGKTFALTMIDCPGHA
NFHDESVASLRVADGAALVVDAIEGIMLHTEMLLRQIISEGLPLILVINKIDRLILELKL
PPDDMYHKLRNVIDSVNAFVSHQSNGRYPKLSPDRGNVIFASSMHGYAFSLESFATQYLD
QLDNLTPETFATRLWGNSYLDPKSRTFQRRAGDCSPDPHTRMSPKRTFVQFVLEPMYKMY
TLCVGESEKDTEKAFRSLGVLLGKEQLRASARPLMRAAFRKYFGVSTGFVDTAVKNIPSP
AAAAKGKVARCYSGPLSSRTVTSMIKCNSHGPLVIHVAKLYAESDGQSFSAFGRIYSGTV
KPGDRVKVLGEAYTPDDDEDMAFATVSSVWIPRGRSRSEVMMARAGNWVLLGGVDADIVK
TATIVGAGESNYGGDDGDGEIHIFSPLKYPQAGGEATMKLAVEPLNPAELPKMVEGLRRV
SKSYPMSTTRVEESGEHVLFGTGELYLDCIMHDLRTVYSDIEVKVADPVVGFRETVVETS
SVKCFSETANKRNKLTFIAEPLDDGLAEKLEAGKVNLNWDNRKLGRFFQTKYDWDLLSSR
SVWAFGSSPTHGTNILMDDTLPSEVDKTLLKSCKPSIVQGFQWATREGPLCEEPVRSTKV
KILDVALADKAIHRGGGQLIPTARKTVHSALLTATPRLMEPWYRLQIQCPGEIVSAIQPV
LAKRRGHIVQDKPIPGSPLFSVKAFLPVLDSFGFETDLRTFTQGQAMVHSVFDHWAIVPG
DPLDKSIVLHPLEPSPPQCLARDFLVKTRRRKGLSDDVSLAKFFDEGMRAQLLQEPSVEN
MALSN
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atggaattggaggatcctattgtggagcctgtgaagaaacaaacgtttagtttgatgagg
gatgagaatgaggagagggaagcatatttggcttccttggtagccaatgaaactacccgc
acaagacgttgtctcgccctagttggacacttgcacacgggaaaaacatccctcgttgac
ttattcatcgaacagacaaaagtcccaaccacatccgctaacaacaacggactcaccgac
acgttgcaatcggaacaagatcggcaaatgtccatcaaaagctgtcccattacgttatgt
ttgcccgatacgagggggaagacatttgcactgacaatgattgactgtccgggacatgcc
aattttcatgatgagtcggtggcgtccttgagggtagcggatggtgcagccttggtggtc
gatgctattgaggggattatgcttcatacggaaatgttattgaggcagattatctcggag
ggactaccgttgatattggtgattaacaagattgatcgtttgattttggagttgaagttg
ccaccggatgatatgtatcacaagttgaggaatgtgattgattcggtgaatgcctttgtg
agtcatcagtcgaatggacggtatccaaagctatcgccggataggggaaatgtcatcttt
gcctcgtcgatgcatgggtatgcgttttcgttggagagttttgcgacgcagtatttggat
cagttggataatctgactccggaaacatttgccactcgtctgtggggtaattcatacttg
gatccaaagtcacgaacgttccaacgtcgtgcaggagactgttcgcccgatcctcacacg
aggatgtcacccaaacgtacatttgtgcaatttgtgttggagccaatgtacaagatgtac
acgttgtgtgttggggagagtgagaaggatacggagaaggcgtttcgtagtttgggagta
ttgcttggaaaggagcaattgagggcttcggctaggcccttgatgagggcagcgttccga
aagtactttggggttagtacgggttttgtggatactgctgtgaagaacattccatcacct
gctgcggcagccaaaggaaaggtagctcgttgttactctgggcctttgtcttctcgcact
gtgacatcaatgatcaaatgcaattcgcacggccctcttgtgattcatgtggcgaaactc
tatgctgaatcggatggacagtcattctctgcgtttggaagaatctactcaggaactgtg
aaacctggggatcgtgtgaaagtactcggggaagcatacactccagacgatgacgaggat
atggcatttgcgacggtctcttctgtttggattccccgtggacgatctcgtagtgaggtt
atgatggcaagggccggaaactgggtgcttcttggtggtgttgatgctgatattgtaaaa
acagcaactattgtcggtgcgggggagagtaactacggtggtgacgatggggatggcgag
attcacatattttctcctctgaagtatcctcaggctggtggtgaagcgacaatgaaacta
gcagtggaaccattgaacccggcagagttgcctaaaatggtagaaggtctccgtcgtgtt
tctaaatcctatccaatgtcaactacacgtgtggaagagagtggcgagcatgttctcttt
ggaacgggggagctctatcttgattgcataatgcacgatcttcgtaccgtctattctgat
attgaggtcaaggtagcagaccctgttgtcggcttccgcgagactgtggttgaaacgagc
agtgtaaagtgcttctctgagactgcgaacaaacgtaacaaactcactttcattgcagag
ccacttgatgatggcttggcagagaagcttgaagctggcaaggttaacttgaactgggac
aaccgaaagctagggaggttcttccagacaaagtacgattgggacttgttgtcgtcacgt
tccgtctgggctttcggatcttctcccacacatggaaccaatattctcatggatgacact
cttcccagtgaggttgataagacattgctgaaatcatgcaaaccaagtattgttcaggga
ttccaatgggctacgagggaagggcctctttgcgaggagcctgtaagatcaaccaaagtg
aagattcttgatgttgccttggcagacaaggccattcatcgtggaggtggtcagcttatt
cccaccgcaaggaagacagtacactctgccttgttaacagcgactcctcgtttgatggaa
ccatggtatcgtcttcaaatccaatgccctggtgagatcgtgagtgcaatccagcccgtt
ttggcgaagcgtagggggcacattgttcaagacaagccgatccctggatctcctctgttc
agtgtcaaagcgttcctccccgtgttggatagctttggatttgagactgatttgagaaca
ttcacacaggggcaggcaatggttcactctgtctttgatcattgggccattgtacccggt
gatccattggataagagcatcgttttgcatccattggagccaagtcctccccaatgcctt
gcaagggacttccttgtcaagacacgcaggcgtaagggtttgtctgatgatgtgtctctt
gcaaagttctttgacgaaggcatgcgagctcagctgttacaggagccttcagtggagaac
atggctttgtcaaactaa
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