Thalassiosira pseudonana: THAPSDRAFT_268889
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Entry
THAPSDRAFT_268889 CDS
T01078
Name
(RefSeq) hypothetical protein
KO
K15083
DNA repair protein RAD16
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tps03400
]
THAPSDRAFT_268889
DNA repair and recombination proteins [BR:
tps03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
THAPSDRAFT_268889
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
zf-RING_5
zf-C2HC_2
zf-C3HC4
zf-C3HC4_3
DUF1178
Zn_ribbon_5
Zn_ribbon_4
Motif
Other DBs
NCBI-GeneID:
7449634
NCBI-ProteinID:
XP_002290235
JGI:
268889
UniProt:
B8C2Q4
LinkDB
All DBs
Position
5:1006605..1010595
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AA seq
716 aa
AA seq
DB search
MRHQEVKVPEIRGGILADEMGMGKTIQTIAACKIVSREQNSSVASFQFLGTLVICPVIAL
SQWKSEIEKFSEEGSLSVCTYHGSDRETQTPRELMKKYDIVLTTYQVVEQDFRKMTSPNR
VECPNCGGKFKIDKLPIHLKYFCGANAQKTEAQARQRKDKKSQTDGSKTKKKIAVVDKKK
AVTARKKSVPKKTPSKSQSTDTKNSVLHSLCWWRIILDEAHFIKTRSSQTANAAFSLIGI
HRWALSGTPLQNRVGEFYSLIRFLRLDPMAYYFCRCKDCNCRNMHYRMKAGICEDCGHGG
VQHYSHFNKYVLNPIQRDGFSGDGRRAMFALKNEVLDKCLLRRTKETKAADMELPPRIVQ
IKPVRLHPVEEDFYNALYTQTKSSFNDYVDSGTVLNNYAHIFDLLIRMRQSVDHPYLVIY
SNKNTDNGRRAPSGEVIAIANGSADCDLCHEPPTDRVVSTCCGAAYCKSCVLEYMAGTAG
LAASAGMSCPSCRGAFSIDLETQVDPAGPDMGIPSLKELQHVATGSILRRINLAEFATSS
KIEALTQELVMMRQMSPGSKAIVFSQFTNMLDLIRWRLHSDPYLEDIGLGCRALHGGMNV
KARDICLKEFREDNNVRVLLMSLKAGGVALNLTCANYIYLIDPWWNPAAEMQAIDRTHRL
GQYRPIRAIRFIAENTVEERILQLQEKKRLVFDGTIGRDAGSLLKMTVDDMKCLFA
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcaccaagaggttaaagttcccgagattcgtggtggtatcctggctgatgagatg
ggaatgggtaaaacgattcagacaattgctgcatgcaaaatcgtatcacgtgagcaaaac
tcatctgtcgcctcgtttcaattcctagggacgttggtgatttgtccagtgattgcactt
tctcaatggaagtctgagatagaaaagtttagcgaagaaggaagtttgtctgtatgcact
taccacggctcagacagagagacacagacccctcgcgagttgatgaaaaaatatgatata
gtattgaccacataccaagtcgtggagcaggacttccggaagatgacttcccccaacaga
gtcgagtgtcctaactgtggtggaaagttcaagattgacaaacttccaatccatctaaag
tacttctgtggagctaatgcacaaaagacggaggcgcaggcacgtcagcgcaaggacaag
aagagtcaaactgatggtagtaaaacaaagaagaaaattgctgtcgttgacaagaagaaa
gctgtaaccgcgaggaagaagtctgtacccaagaagactccctcaaagtcacaatcaact
gacacaaagaactccgtgttgcattcattgtgttggtggcgaatcatcctagacgaggcc
catttcattaaaaccagatcatcacaaacagccaatgcagccttctctctcatagggatt
catcgttgggctttaagtggcacacccttgcagaaccgtgttggagagttctattcgttg
attaggttccttcgacttgatccgatggcatactacttctgccgttgcaaggattgtaac
tgtcgtaacatgcactacaggatgaaggccgggatatgcgaagactgtggtcatggtgga
gtgcagcattacagtcacttcaataagtatgtcttgaatccaatccaacgagacggtttc
agtggcgacggacgacgtgcgatgttcgctttgaaaaatgaggtgttggataagtgcctg
cttcgccgcacgaaggagaccaaggctgcggatatggagttgccaccgaggatcgttcag
attaagcctgttcgtcttcatccggtggaggaagacttctacaatgctttgtatactcag
acgaagagttcattcaatgactacgtcgacagtggtactgtgttgaacaactatgcacat
atctttgacttgttgatacgaatgagacagtcggtggatcatccttacctcgtgatctac
tcaaacaagaacacggacaatgggcgaagagctccttctggtgaggtcatcgcaattgcc
aacggatctgcagattgtgacctctgccacgagcctccaaccgaccgggtcgtatccacc
tgttgcggtgctgcatattgtaaaagctgcgtgcttgagtacatggccggaacagctgga
ctggcagcatccgccggcatgtcttgtccatcgtgcagaggagctttctcaattgatctc
gaaacgcaggtggatccagcggggcctgatatgggcattccttctctgaaagaactgcaa
cacgttgctacaggctctatactaaggaggatcaatttggcagaatttgctacctccagt
aagattgaggcactcactcaggaacttgttatgatgagacaaatgagtccaggaagcaaa
gcaattgtattctcgcaattcacgaatatgctagatctcattaggtggcgattgcattcc
gacccttacctcgaagacattggactcggatgtcgagcactgcacggagggatgaacgtg
aaggcacgagatatctgcttgaaagagtttcgcgaagacaacaacgtgagagtattgcta
atgtcactcaaagcaggcggtgtggctctaaatctgacttgcgcaaattatatatatctg
attgacccatggtggaaccctgctgctgaaatgcaagccattgaccgtacccatcgtctc
ggccaataccgtccaatcagagcaatccgattcatcgcagagaacactgtcgaagaacgt
attctacagctccaagaaaagaagaggctcgtttttgatggaaccattgggagggatgct
ggttcactgctgaagatgactgtcgacgatatgaagtgtctctttgcgtag
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