KEGG   Thalassiosira pseudonana: THAPSDRAFT_5036
Entry
THAPSDRAFT_5036   CDS       T01078                                 
Name
(RefSeq) predicted protein
  KO
K11863  ataxin-3 [EC:3.4.22.-]
Organism
tps  Thalassiosira pseudonana
Pathway
tps04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    THAPSDRAFT_5036
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:tps01002]
    THAPSDRAFT_5036
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:tps04121]
    THAPSDRAFT_5036
Peptidases and inhibitors [BR:tps01002]
 Cysteine peptidases
  Family C86
   THAPSDRAFT_5036
Ubiquitin system [BR:tps04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   MJD
    THAPSDRAFT_5036
SSDB
Motif
Pfam: Josephin UBX UIM OTU1_UBXL
Other DBs
NCBI-GeneID: 7447272
NCBI-ProteinID: XP_002290064
JGI: 5036
UniProt: B8C1S7
LinkDB
Position
5:<221258..>223266
AA seq 441 aa
MSNILFQRWLLMMYDVTISSSDGTIRHSRPDHAPPLAANRTILLDQKPHRLAIFILPIKS
SSHFQTASTTSNEQPTRPSLLYHLPPNSKLMSSYWIYHEKQESMLCGQHALNNLIQRNSF
DPQQLSEIAQQLDQMELNYMAANNEGGTSSKDYLKRLQEGSGNVDESGNFSIEVLRSALM
SRYDLELPNLLQQGLNKLEITEMEGFICNRSSHWFAIRKINGRFWNLNSTNERPEVISHF
KLASEMQALMDGGWSVFCVVSGLPGACSCEAMMDQGLPQYWWKEEDLLEGKTNAMTRATD
PWKGVGSGRRLDGGNNNGGGSNSKSIHDMSDEEMLQYAMAASLEQPARAEKSASYELTDE
PLEGAPNAVKCNFRLPDGTRTSRRFLSSERVGVLYAFVESKCSQQKVELRAGFPPKDIAS
RQDDTIERAKLSGEMILSKLL
NT seq 1326 nt   +upstreamnt  +downstreamnt
atgtcgaatattctctttcaaagatggttactcatgatgtacgatgtgacgatttcatcc
agtgacgggacgatacgtcactccaggcctgaccatgcaccgcctcttgcagccaatagg
actatactacttgaccagaagccccatcggttagcaatctttatccttcccatcaaatct
tccagtcacttccagaccgcttcgacgacgtccaacgaacaaccaacgcgtccatctctt
ctctaccatctaccgcccaactccaaactaatgtcaagctactggatctatcacgagaag
caggagtccatgctctgcgggcaacatgcgttaaataacctcatacaacgcaactccttc
gacccccaacaactctccgaaatagcccaacagcttgaccaaatggaactcaactacatg
gccgccaacaacgagggcggcacctcttccaaagactacctcaagcgcctccaagaaggg
agcggcaacgtggacgaatcagggaatttctccattgaagttctacgctcggccctcatg
tcgcggtatgaccttgaattacccaatcttctccaacaaggcctgaacaagttggaaatc
acagagatggagggatttatttgcaatcgttcctcgcattggtttgccattcgtaagatt
aacggacgattttggaatttgaacagcacgaacgagaggccggaggtgattagccatttt
aagcttgcgagtgagatgcaggcgttgatggacggggggtggagtgtgttttgtgttgtg
agtgggctgccgggggcttgtagttgtgaggccatgatggatcagggattgcctcagtat
tggtggaaagaggaggatcttctcgaaggcaaaactaacgccatgacaagggcaacagat
ccatggaaaggagttggcagtggaagaaggctcgacggaggcaacaacaacggaggggga
tcaaacagcaaatctattcatgacatgagtgacgaggagatgttacaatacgcaatggct
gcaagtctagaacaaccagctagagcggagaagagtgcctcatacgaactcaccgacgag
ccattagagggagcaccaaatgcagtaaagtgcaactttcgccttcccgatggaacgcgg
acctctcgtagattcttgtcttcagagagagtgggtgtcctctacgcgtttgttgaaagc
aaatgctcgcaacagaaagtggagctgcgagctggctttcctcccaaagatatcgcttca
cggcaagatgataccattgagcgcgcgaaattgtcaggagagatgattctgtctaagcta
ttgtaa

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