Thalassotalea psychrophila: RGQ13_12440
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Entry
RGQ13_12440 CDS
T10151
Name
(GenBank) helix-hairpin-helix domain-containing protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tpsy Thalassotalea psychrophila
Pathway
tpsy03030
DNA replication
tpsy03410
Base excision repair
tpsy03420
Nucleotide excision repair
tpsy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tpsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RGQ13_12440
03410 Base excision repair
RGQ13_12440
03420 Nucleotide excision repair
RGQ13_12440
03430 Mismatch repair
RGQ13_12440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpsy03032
]
RGQ13_12440
03400 DNA repair and recombination proteins [BR:
tpsy03400
]
RGQ13_12440
Enzymes [BR:
tpsy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RGQ13_12440
DNA replication proteins [BR:
tpsy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RGQ13_12440
DNA repair and recombination proteins [BR:
tpsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RGQ13_12440
NER (nucleotide excision repair)
GGR (global genome repair) factors
RGQ13_12440
MMR (mismatch excision repair)
DNA ligase
RGQ13_12440
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RGQ13_12440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_2
Phage_YunG-like
AftA_C
Motif
Other DBs
NCBI-ProteinID:
WNC70938
LinkDB
All DBs
Position
complement(3044868..3046817)
Genome browser
AA seq
649 aa
AA seq
DB search
MLKFNQNQLSIIAQLNQSPDVSAIESLFNEQNVSEISLGNLLIILEISNALYRSGHPVID
DQVYDAVYLQELKNRKQEHPFLTTVEPEVIIDSKTVALPKKMLSTDKAYSFEEIRKWIER
LIKAANELNIEHSKINIRVTPKLDGYAAYDDGSKLYTRGDGSRGQDITRAFKRGLKVADE
GARGQGPGEIVIKKSYFDNVLSESFENSRNIQAAIIAEKKVDKAVQIAIDAGACVFYPFS
SITNWTGHYTEVLSDFEPIVERIWNAVDYDIDGVIFEVTNDEIKQLMGATRHHHRWQIAF
KVNDESAEVKVLKVIPQTSRTGRVSPVAELEPTKLSGATISRATVHHYNMVKANGVGPGA
VVQLVRSGLVIPKIEKVITAVTPQLPTDCPSCGTHIIWESDHLVCPNKTDCPAQTENTLV
HFFKTLGNNDGFGPKVIEKLHQHGLKRIHEIYDEAKNKFTGFGFGDKTAQNLVEQLKASR
EIEIEDWRFLAAFGVSRLAGGNCEKLLQHHSIDELFDASVDDLVKLDGFAQVSAEAIVEG
LENVREEYFKLKPLNFNLAITTKVSEQTTVATPVFGKLIVFTGTMLQGSRGDMEKQAKAL
GAKVGKSVSSKTSYLVAGEKVGANKINAAKDKGVTVLSEQEYLELLASN
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaatttaatcaaaatcaattatcaatcattgcacaacttaaccaatcaccagac
gtttctgctattgagtcattgtttaatgagcaaaacgtaagtgaaatatccctaggcaat
ctattaattattcttgaaatttctaatgctttatatcgttcgggccatccggttatcgat
gatcaggtttatgatgccgtctacttgcaagaattgaagaatagaaaacaagagcatcca
tttttaaccactgttgaacccgaagttattattgatagtaaaacagttgctctacctaaa
aaaatgctttctacagataaagcctattcatttgaagaaataagaaaatggatagagcgg
ttaatcaaagcagcaaatgaactgaatatcgaacattcaaaaataaatattagagttacg
ccaaaacttgacggttatgcggcatatgatgatggctctaagctttacactcgtggtgat
ggtagtcgcggtcaagatatcactagagcgttcaaacgcggcctaaaggtagctgatgag
ggcgctcgagggcaagggcccggtgagattgtgatcaaaaaaagctattttgataatgtg
ttaagcgaaagctttgaaaactccagaaacatacaagccgcgatcattgctgaaaagaaa
gtcgataaagccgtgcaaatagcgatagatgctggagcttgtgtcttttatccattttca
tcaattaccaactggaccggacattacactgaagtattaagtgattttgaacctatagtt
gagagaatttggaacgcggttgattatgatatagacggcgttattttcgaagtgactaat
gacgaaataaaacagcttatgggagcaactaggcatcatcatcgttggcagatagcgttt
aaagtgaatgatgagtcagcagaagttaaagtactaaaagtgatcccgcaaacgtctaga
acgggaagagtttctcctgttgctgaattagagccgacaaaattaagcggtgcaacaata
agtcgcgcaaccgtacatcactataatatggttaaagccaatggcgttggtcctggagct
gttgtgcagcttgtaagaagtggcctggtcatacctaaaatagaaaaagtaataacagcg
gtaactccacagctaccaacagattgtcccagttgtggtactcatattatctgggagtcg
gatcatttggtttgcccaaataaaacagactgtccagcacaaacagaaaatactttagtg
cactttttcaaaaccttaggtaataacgatggctttggaccgaaagtcattgaaaaactt
catcaacatggacttaaacgaattcatgagatttatgatgaagcaaaaaataaatttaca
gggtttggcttcggtgataaaaccgcacaaaacctagtagaacagttaaaagccagcaga
gaaattgaaatagaagattggcgattccttgccgctttcggggtgagtagacttgcggga
ggtaattgcgaaaaactattgcaacatcactccatagatgaactttttgatgccagtgtt
gatgatttagtcaaacttgatgggtttgcccaagtaagtgctgaagcgattgttgagggg
ttggaaaacgtaagagaagagtacttcaagcttaagccgctaaacttcaacttagctata
acgactaaagtttctgagcaaacaactgttgcaacaccagtctttggaaagttaatcgta
ttcaccggaactatgttacaaggctctcgtggcgatatggaaaaacaagctaaagctctt
ggggctaaagtgggcaaatcggtttccagtaaaacctcttaccttgttgccggcgaaaaa
gtaggagccaataaaatcaatgcagctaaagataaaggcgtaacggttttatctgagcaa
gagtaccttgaattattagcaagcaattag
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