Thermotoga petrophila RKU-1: Tpet_0824
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Entry
Tpet_0824 CDS
T00525
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tpt
Thermotoga petrophila RKU-1
Pathway
tpt03030
DNA replication
tpt03410
Base excision repair
tpt03420
Nucleotide excision repair
tpt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tpt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Tpet_0824
03410 Base excision repair
Tpet_0824
03420 Nucleotide excision repair
Tpet_0824
03430 Mismatch repair
Tpet_0824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpt03032
]
Tpet_0824
03400 DNA repair and recombination proteins [BR:
tpt03400
]
Tpet_0824
Enzymes [BR:
tpt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Tpet_0824
DNA replication proteins [BR:
tpt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Tpet_0824
DNA repair and recombination proteins [BR:
tpt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Tpet_0824
NER (nucleotide excision repair)
GGR (global genome repair) factors
Tpet_0824
MMR (mismatch excision repair)
DNA ligase
Tpet_0824
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Tpet_0824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
HHH_8
5_3_exonuc
HHH_3
RNA_ligase
BRCT_2
RUBY_RBDX
UPF0758_N
UBA_3
Motif
Other DBs
NCBI-ProteinID:
ABQ46843
UniProt:
A5IKX0
LinkDB
All DBs
Position
837954..840020
Genome browser
AA seq
688 aa
AA seq
DB search
MSERKIPKEVIEEVERLREEIEYHNYRYYVLNDPVITDEEYDKLMRRLIELERMYPELVT
PDSPTQRVGGKVLEGFKTVKHSVPMLSLDNTYNEEEILEFDRRVKKTLQEAEVEYVAELK
IDGVSIALRYENGKFVLGATRGDGIEGEDVSENVKTVRSIPLRLRKPVTVEVRGEIYMPV
DEFKRLNDEREEEGLPPFANPRNAAAGTLRQLNTALVAARRLDSFIYYVVHPENYGLKTQ
WEALQFLKELGFKVNPHSKLCKNIQEVIDYWREWEERKKELDYWVDGVVVKVNRFDFQRI
LGETSKAPRWAIAFKFPAEQARTRVLDVTIQVGRTGVLTPVAELEPVQLAGTIVKRASLH
NFEYIREKDIRIGDYVFVEKAGGIIPQIVKSIPELRTGSEKEIKPPDKCPVCGGKVGKLD
PEEVALRCLNPHCPAKLKRALRTLVSREALDIEGLGEKLIDRLVDAGLVKDIADIFYLTP
FDLAQLGPGIGQRTIAKILQEIEEAKKRPLHKLITGLGIPMVGQKTAKILAEHFKSLEAI
ADASYETLKDIPGIGPEIAKSIVEYFRNPKTREIIEKLKKAGVKLEERVMKLDILKGLTF
AVTGTLKNFTREEIVEFFEKLGAKVVNSVSRNTDYLIVGENPGSKYEKAKMLKVKTMSEE
EFLEFVRKRAELKGYNFDEIMRSWKEWS
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagagaaagatcccaaaggaagtaattgaagaagtggaaaggctcagagaggag
atcgagtatcacaactacagatactacgttttgaacgatccagttattacggacgaggaa
tatgacaaactcatgagaaggctcattgaactggaaaggatgtatccagaactggttaca
ccggattcgccaactcagagggtagggggaaaggtactcgaaggttttaaaacggtaaag
cattccgttcctatgttgagtctggataacacgtacaacgaagaagagattctcgaattc
gatcggcgtgttaaaaaaactcttcaggaggcagaagtcgagtacgttgccgagctgaag
atagacggcgtttccatagctctcagatatgagaacggaaagttcgtcttgggagcgaca
cggggagatgggatagaaggagaggatgtctctgagaatgtgaagaccgtacgcagtatt
ccacttcgtctgagaaagcccgtcaccgtagaagtgagaggggaaatatacatgcctgtg
gatgaattcaaaaggttgaacgatgaaagagaagaagaaggactacctccttttgccaat
ccgaggaatgccgctgcaggaacgcttcggcagttgaacacggcactcgttgcggcaagg
cgtctggattcgttcatctactatgtggttcatcccgaaaactacggtttgaagacacaa
tgggaagctctccagtttctgaaagaactcggtttcaaggtgaatccacactctaaactg
tgtaaaaacattcaggaagtgatcgattactggagggagtgggaagaaagaaagaaggag
ctggattattgggttgatggcgttgtggtgaaggtgaacagattcgatttccagagaatt
ctcggcgaaacatcgaaagcaccgcgatgggctatcgcattcaaatttcccgctgagcag
gcaagaaccagggtgctggatgtcaccatccaggttggacgaacaggtgttctcacaccc
gttgccgagctcgaacccgttcagctcgctggaacgattgtgaagagagcttcgctgcac
aatttcgagtacataagagaaaaagatatcaggataggagactatgtctttgtggaaaaa
gccggtggaatcattcctcaaatagtcaaatcgataccggaattgagaaccggaagcgaa
aaggaaataaaaccacccgataagtgtcctgtctgcggcgggaaagtaggaaagttggat
cccgaagaggttgctctcaggtgtctaaacccgcattgtcctgccaaactgaagagggct
ttgaggactctggtttccagagaggctctcgatattgaaggactcggggagaagttgata
gacagattggtcgatgctggccttgtaaaggatatagcggatatcttctacctcactcct
ttcgatctcgctcagcttggaccggggatcggtcagcgaacgatagctaagattctccaa
gagatagaagaggcgaagaagaggccgctccataaactgataacgggtcttggaattccc
atggtaggtcagaagacggcgaaaatcctcgcggaacatttcaaatccctggaagcaatc
gcagatgcttcttatgaaacactgaaggacataccgggaatcggtccagaaatcgcaaag
agcatcgttgagtacttccgaaatccaaaaacaagggaaatcattgaaaaactcaaaaaa
gctggagtgaaactcgaagagagagttatgaaactcgatattctgaagggattgactttc
gccgtgacaggtaccttgaagaactttacgagagaagaaatagtagagtttttcgagaag
ctgggagcgaaagtcgtcaactctgtgagcaggaacacggactatctcatagtgggtgaa
aatcccggttccaagtacgaaaaagcgaagatgttgaaagtaaaaacgatgagtgaggaa
gaattcctcgagtttgtcagaaaaagagcagaattgaaagggtacaacttcgatgagata
atgaggagttggaaggaatggagttga
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