Tatumella ptyseos: NCTC11468_03862
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Entry
NCTC11468_03862 CDS
T05493
Symbol
ligB_1
Name
(GenBank) DNA ligase B
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tpty
Tatumella ptyseos
Pathway
tpty03030
DNA replication
tpty03410
Base excision repair
tpty03420
Nucleotide excision repair
tpty03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tpty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC11468_03862 (ligB_1)
03410 Base excision repair
NCTC11468_03862 (ligB_1)
03420 Nucleotide excision repair
NCTC11468_03862 (ligB_1)
03430 Mismatch repair
NCTC11468_03862 (ligB_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpty03032
]
NCTC11468_03862 (ligB_1)
03400 DNA repair and recombination proteins [BR:
tpty03400
]
NCTC11468_03862 (ligB_1)
Enzymes [BR:
tpty01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC11468_03862 (ligB_1)
DNA replication proteins [BR:
tpty03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC11468_03862 (ligB_1)
DNA repair and recombination proteins [BR:
tpty03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC11468_03862 (ligB_1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC11468_03862 (ligB_1)
MMR (mismatch excision repair)
DNA ligase
NCTC11468_03862 (ligB_1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC11468_03862 (ligB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
SQK77499
UniProt:
A0A2X5NVR7
LinkDB
All DBs
Position
1:3569689..3570891
Genome browser
AA seq
400 aa
AA seq
DB search
MAADCPPWTPARALTEVAGLQQQLRQWDDAYYRQGLSPVSDSDYDRLSEKAALWQKCAGL
PPSRAIPRWPADGRQRHPVAHTGVRKLKDKLAVSRWMQNKQPLIVQPKIDGVAVTLVYRH
GKLSAVTSRGDGLQGEPWLGRALAITAVPPVIPADAAIIVLQGEIFLPRRQHRRAREGGG
GDRARVAGLMRSQSSLPAGQRLGIFIWAWPDGPPSLQTRITQLSEWGFPLTRAWTREVVT
AEEVALWRDRWFRGELPFTTDGIVIHSLPAASQQWRPGHNLWSAAWKYPAPEISTGVREI
RFTVGRTGKVSVVATLQPVPLDDKRISRVSLGTVAAWRRRDILPGDEVIIGLAGQGVPAI
RRVVWRVAERHYPAPPSEARFHEFSCFRLTTACREQFYPG
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagactgccccccgtggacccccgcccgggcgttgacggaagtggccggtctt
cagcaacagctcaggcagtgggatgatgcttactaccgccaggggctgtcaccggtaagt
gacagcgactatgatcggctgtcggaaaaagcagcgctttggcagaaatgtgccgggtta
ccgccgtcgcgcgctatcccccgctggccagccgatggccgtcagcggcatcctgtcgcg
cataccggtgtgcgtaagctgaaagacaagctggcggtttcccgctggatgcagaataaa
caaccactcatcgtacagcctaaaatagacggcgtggcggtcacgctggtataccgccac
ggtaagttgtctgccgtgaccagccgcggggacggtttgcagggcgagccctggcttggc
agagcgttagcaattactgcggttccgccggtgatccctgcagacgcggcgatcatcgta
ctacagggtgaaatttttttaccccggcggcaacatcgacgggcccgggaaggcggaggg
ggtgacagggcccgtgttgcaggactgatgcgcagtcagagctctctcccggcaggtcag
cggctggggatctttatctgggcctggccggatggcccgccgtcgttacagacacgcatt
acgcaactgtcggagtggggttttcccctgacgagagcatggacccgggaggtggtaacg
gcagaggaggttgcgctgtggcgtgaccgttggtttcgcggcgagttaccctttactaca
gacggtattgtgatccactcccttcctgcggcttcgcagcaatggcgacccgggcataac
ctctggtctgcagcctggaaatatccggcccccgaaatcagtaccggcgtccgggagatc
cgttttacggtcggacggacaggaaaagtgtccgttgtcgcgacgctgcagccggtaccg
cttgacgataaacgcatcagccgcgtcagtctcgggactgtcgcagcctggcgacgccgg
gatattcttcccggggatgaagtcatcatcgggctggccgggcagggggttcctgccatc
cgacgagtggtgtggcgggtggctgagcgtcattatcctgccccgccgtcagaggccagg
tttcatgaattcagctgtttccggctgacgaccgcatgccgtgaacaattttatccaggc
tga
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