Candidatus Thiothrix putei: QJT81_07440
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Entry
QJT81_07440 CDS
T10292
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tput Candidatus Thiothrix putei
Pathway
tput03030
DNA replication
tput03410
Base excision repair
tput03420
Nucleotide excision repair
tput03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tput00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QJT81_07440 (ligA)
03410 Base excision repair
QJT81_07440 (ligA)
03420 Nucleotide excision repair
QJT81_07440 (ligA)
03430 Mismatch repair
QJT81_07440 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tput03032
]
QJT81_07440 (ligA)
03400 DNA repair and recombination proteins [BR:
tput03400
]
QJT81_07440 (ligA)
Enzymes [BR:
tput01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QJT81_07440 (ligA)
DNA replication proteins [BR:
tput03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QJT81_07440 (ligA)
DNA repair and recombination proteins [BR:
tput03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QJT81_07440 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QJT81_07440 (ligA)
MMR (mismatch excision repair)
DNA ligase
QJT81_07440 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QJT81_07440 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
WGZ95813
UniProt:
A0AA95HIT9
LinkDB
All DBs
Position
1438072..1440081
Genome browser
AA seq
669 aa
AA seq
DB search
MQEVQQQLETLREQLRYHNHRYYVLDDPEVPDVEYDRLFRELQALEAAHPDLITPDSPTQ
RVGAAPLSEFGEIKHAIPMLSLGNVFSDEELLAFDKRIHDRLKSDAETEFVAEPKLDGLA
ISILYENGVFTRAATRGDGETGEDVTHNVRTIASVPLRLLGEGYPAVLEVRGEIYMPKAG
FEAFNAKMRALGEKTFVNPRNAAAGSLRQLDPRLTAQRPLDIFCYAVGQVEGGIVPDNHY
AILQQFRAWGLRVCPDIRIVQGAQGCLEYFREIGARRNSLPYDIDGVVYKVNSIATQQEL
GFISRAPRWAMAHKFPAQEEITELEGVDFQVGRTGALTPVARLKPVFVGGVTVSNATLHN
MDEIERKNVHIGDFVIVRRAGDVIPEVASVILERRPAGAVPIVMPTHCPVCGSEVKRPEG
EAVARCTGGLYCPAQVKEAIKHFASRKALNIDGLGDKMVEQLFDAGLIRHVDDLYSLDVE
AVAALERMGKKSAENLIAALESSKSTTLERFIYALGIRNAGEGTAKGLARYFGSLEAIQA
ANEETLKLVPDIGVIVAANVALFFAEAHNRDTIQHLRDLGVHWANYEAKPAEALPLAGKT
YVITGTLSRAREDIKADLEALGAKVSGSVSKKTTALIAGENAGSKLDKAQSLGVEVLDEN
ALSALLNHS
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaagtacaacaacagcttgaaaccctgcgtgaacaactgcgttatcacaatcac
cgttactacgtgctggacgacccggaagttcccgacgtggaatacgaccgcctgttccgc
gagttacaggcgcttgaggctgcgcatcccgatctgatcacccccgactcgcctacccag
cgcgttggggctgcaccgttaagtgagtttggcgaaatcaaacacgctatcccgatgcta
tcgttgggcaatgtgttcagtgatgaagaattgctggcatttgataaacgcattcatgac
cgtctcaaatccgatgcggaaactgaattcgtcgccgaacccaaactcgatggtttggca
atcagcattctttacgaaaatggtgtattcacccgtgcggcaacccgtggcgatggcgaa
accggcgaagatgttacccacaacgtgcgtactattgcttccgtgcccttgcgtttgttg
ggtgaaggctacccggcggtgttggaagtgcgcggcgaaatctacatgcctaaagccggg
tttgaagccttcaatgccaaaatgcgggcattgggcgaaaaaaccttcgttaatccgcgt
aatgccgcagcaggcagtttgcgccaactggatccgcgcctcaccgcacaacgtccgttg
gatattttttgctacgcggtagggcaggttgaaggtggcatagtgccggataaccattac
gcgattctgcaacaattccgtgcgtgggggttgcgggtgtgccctgatattcgcatcgtg
cagggggcgcaaggctgtctggagtatttccgcgagattggcgcacggcgtaacagtttg
ccctatgacatcgacggcgtggtctataaagtcaacagcattgccacccaacaagaactc
ggttttatcagccgtgcgccgcgttgggcaatggcacacaaatttcccgcgcaggaagaa
atcactgaactcgagggcgttgattttcaggtggggcgtaccggcgcactcacccccgtt
gcccgtctcaaaccggtattcgtcggcggcgtgactgtcagcaatgccaccttgcacaat
atggatgaaatcgagcgtaagaatgtgcatatcggcgattttgtgatcgtgcgccgggct
ggggatgtgattcccgaagtcgccagcgtgatcctcgaacgtcgtcctgctggtgctgta
ccgatagtcatgcccacgcattgcccggtgtgcggctcagaggtgaaacgccccgaaggt
gaagccgtcgcccgctgtactggcggattgtattgccccgcgcaagtcaaagaagccatc
aaacacttcgcctcacgcaaagccctgaacatcgacggtttaggcgacaaaatggtggaa
caattgtttgatgccggtttgatccgccacgttgacgacctctacagtctggatgtggaa
gccgttgccgcgttggaacgcatgggcaagaaatccgcagagaatctcatcgcagccttg
gaaagcagcaaatccaccacgctggaacgctttatttacgcgctaggcatccgcaatgca
ggcgaaggcacggccaaaggtttggcacgttatttcggctcactggaagcgattcaagct
gccaacgaagaaaccctgaaactcgtgcctgatattggcgtgatcgtggcggcgaatgtt
gccctgtttttcgcagaagcgcacaaccgcgataccatccagcatttgcgggatttgggc
gtgcattgggcgaactacgaagccaaacctgccgaagccttgccattagcaggcaagact
tacgtgattaccggcacgctcagccgtgcgcgtgaagacatcaaagccgatctggaagcg
ttgggagcgaaagtgtcgggcagcgtttccaagaaaaccacggcgttgattgcgggcgaa
aatgcgggttcaaagctggacaaagcgcagagccttggggttgaagtcttggatgaaaac
gctttatcggctttattgaaccactcataa
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integrated database retrieval system
